Wall clock time and date at job start Mon Mar 30 2020 03:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46907 * 2 1 4 4 C 1.50696 * 109.47481 * 240.00076 * 2 1 3 5 5 H 1.07999 * 120.00130 * 239.99695 * 4 2 1 6 6 C 1.37880 * 120.00163 * 59.99568 * 4 2 1 7 7 N 1.31517 * 119.99781 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00109 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47008 * 89.99972 * 8 6 4 10 10 H 1.48500 * 109.46819 * 210.00164 * 8 6 4 11 11 H 1.48499 * 109.47124 * 329.99845 * 8 6 4 12 12 N 1.46896 * 109.47453 * 119.99323 * 2 1 3 13 13 C 1.46908 * 110.99559 * 58.96019 * 12 2 1 14 14 C 1.38662 * 111.00348 * 295.00665 * 12 2 1 15 15 N 1.32894 * 120.49574 * 359.97438 * 14 12 2 16 16 C 1.32443 * 120.64115 * 180.02562 * 15 14 12 17 17 N 1.38525 * 119.15450 * 179.97438 * 16 15 14 18 18 N 1.32426 * 121.68799 * 0.26818 * 16 15 14 19 19 C 1.32560 * 120.94428 * 359.44680 * 18 16 15 20 20 C 1.38243 * 119.25979 * 0.54042 * 19 18 16 21 21 F 1.35095 * 120.77427 * 179.75170 * 20 19 18 22 22 H 1.09000 * 109.46390 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46726 * 299.99939 * 1 2 3 24 24 H 1.08998 * 109.46759 * 60.00544 * 1 2 3 25 25 H 0.96997 * 119.99692 * 179.97438 * 7 6 4 26 26 H 1.09007 * 109.46641 * 296.04386 * 13 12 2 27 27 H 1.09000 * 109.47299 * 56.04121 * 13 12 2 28 28 H 1.08997 * 109.46944 * 176.04719 * 13 12 2 29 29 H 0.97001 * 120.00509 * 0.02562 * 17 16 15 30 30 H 0.97005 * 119.99766 * 179.72040 * 17 16 15 31 31 H 1.07998 * 120.37184 * 180.27682 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4867 -0.1413 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 7 2.0198 -0.6923 1.1995 13 6 1.5285 -2.0760 1.2460 14 6 1.6696 -0.0017 2.3497 15 7 0.9797 1.1315 2.2723 16 6 0.6441 1.7937 3.3691 17 7 -0.0748 2.9721 3.2525 18 7 0.9831 1.3612 4.5740 19 6 1.6664 0.2357 4.7269 20 6 2.0372 -0.4869 3.6082 21 9 2.7383 -1.6355 3.7283 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7096 1.1617 -3.4844 26 1 0.4421 -2.0730 1.3348 27 1 1.8169 -2.5950 0.3319 28 1 1.9619 -2.5867 2.1059 29 1 -0.3262 3.3022 2.3758 30 1 -0.3305 3.4649 4.0480 31 1 1.9342 -0.1108 5.7141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087829223.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:51 Heat of formation + Delta-G solvation = 15.694879 kcal Electronic energy + Delta-G solvation = -17595.005549 eV Core-core repulsion = 14633.464224 eV Total energy + Delta-G solvation = -2961.541326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.73581 -42.00732 -39.21234 -35.66653 -35.01317 -33.68638 -31.33518 -29.90591 -27.49847 -27.23453 -25.18000 -23.83613 -21.89496 -19.69465 -18.69343 -18.35047 -18.02496 -17.04133 -16.98340 -16.70097 -16.28798 -15.54658 -15.31174 -15.20876 -15.04470 -14.52554 -13.99631 -13.40027 -13.08980 -12.96733 -12.73158 -12.54913 -12.49457 -12.08372 -11.96832 -11.75952 -11.60091 -10.99350 -10.53986 -9.97411 -9.63029 -8.89738 -8.12868 -6.26369 0.06162 0.12540 1.43120 1.44109 1.54605 2.15045 2.39389 2.67129 2.81706 3.15686 3.18412 3.38166 3.88401 4.17278 4.30402 4.46928 4.56353 4.70690 4.99951 5.08430 5.11562 5.22669 5.48728 5.56061 5.67918 5.88529 6.00219 6.17637 6.37699 6.42409 6.52646 6.83436 7.41108 7.45388 8.92901 Molecular weight = 240.11amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.007859 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.159627 B = 3561.812976 C = 4248.806352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.233 3.767 3 H 0.013 0.987 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.479 5.479 13 C 0.036 3.964 14 C 0.367 3.633 15 N -0.597 5.597 16 C 0.563 3.437 17 N -0.803 5.803 18 N -0.579 5.579 19 C 0.194 3.806 20 C -0.108 4.108 21 F -0.126 7.126 22 H 0.021 0.979 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.262 0.738 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.419 0.581 30 H 0.426 0.574 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -0.486 12.478 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.127 3.873 3 H 0.031 0.969 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.194 5.194 13 C -0.110 4.110 14 C 0.123 3.877 15 N -0.327 5.327 16 C 0.203 3.797 17 N -0.354 5.354 18 N -0.305 5.305 19 C 0.027 3.973 20 C -0.139 4.139 21 F -0.105 7.105 22 H 0.040 0.960 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.251 0.749 30 H 0.259 0.741 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.698 0.380 12.146 12.270 hybrid contribution -0.001 -0.689 -1.160 1.349 sum -1.699 -0.309 10.986 11.121 Atomic orbital electron populations 1.22165 0.98587 0.98527 1.01388 1.18967 0.91364 0.92809 0.84119 0.96895 1.21409 1.31724 1.13057 0.90849 0.91976 1.25686 0.95155 0.95710 1.01817 1.70041 1.37258 1.23809 1.24144 0.85478 0.78851 0.78219 0.78608 1.19842 1.20983 1.19387 1.59131 1.53628 1.04946 1.01649 1.22480 0.98084 0.85820 1.04570 1.20502 0.86490 0.89788 0.90917 1.68185 1.20358 1.11830 1.32365 1.19627 0.87873 0.87988 0.84255 1.41687 1.58982 1.21310 1.13401 1.68046 1.21555 1.16941 1.23921 1.23383 0.88067 0.86808 0.98998 1.18620 1.09772 0.90973 0.94497 1.91394 1.76961 1.45904 1.96265 0.95971 0.93389 0.91944 0.92841 0.94681 0.89691 0.89151 0.74939 0.74076 0.76527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.35 8.22 71.98 0.59 -6.76 16 2 C 0.23 12.12 1.97 44.17 0.09 12.21 16 3 H 0.01 0.78 7.76 -2.38 -0.02 0.76 16 4 C -0.53 -29.22 7.88 25.60 0.20 -29.02 16 5 H 0.06 3.35 6.77 -2.91 -0.02 3.33 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.91 -52.25 11.32 21.45 0.24 -52.00 16 8 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.48 -21.63 4.75 -706.02 -3.35 -24.98 16 13 C 0.04 1.39 8.47 127.69 1.08 2.47 16 14 C 0.37 15.01 6.02 133.19 0.80 15.82 16 15 N -0.60 -24.09 6.67 -195.31 -1.30 -25.40 16 16 C 0.56 18.61 8.67 261.48 2.27 20.88 16 17 N -0.80 -19.82 9.07 -59.74 -0.54 -20.36 16 18 N -0.58 -17.12 10.45 -198.07 -2.07 -19.19 16 19 C 0.19 5.23 11.28 84.58 0.95 6.19 16 20 C -0.11 -3.62 7.04 22.65 0.16 -3.46 16 21 F -0.13 -4.06 14.94 44.97 0.67 -3.39 16 22 H 0.02 1.04 6.47 -2.39 -0.02 1.03 16 23 H 0.05 2.25 5.66 -2.39 -0.01 2.23 16 24 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 25 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.03 1.34 6.51 -2.38 -0.02 1.33 16 27 H 0.08 3.42 6.41 -2.39 -0.02 3.40 16 28 H 0.09 3.07 5.81 -2.39 -0.01 3.05 16 29 H 0.42 10.06 8.94 -92.71 -0.83 9.23 16 30 H 0.43 7.70 8.94 -92.70 -0.83 6.87 16 31 H 0.22 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -64.55 258.66 1.81 -62.74 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.46 Total: 17.67 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.59 Total: 19.64 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -7.03 Total: -141.93 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.67 Total: -3.39 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -64.55 1.81 -62.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087829223.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.439 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds