Wall clock time and date at job start Mon Mar 30 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35903 * 117.00232 * 2 1 4 4 C 1.38776 * 120.03799 * 359.72885 * 3 2 1 5 5 C 1.38133 * 119.99213 * 180.29767 * 4 3 2 6 6 C 1.38253 * 120.08061 * 359.95441 * 5 4 3 7 7 C 1.38471 * 120.08555 * 0.04201 * 6 5 4 8 8 F 1.35095 * 119.99531 * 179.97438 * 7 6 5 9 9 C 1.38389 * 120.00506 * 359.97438 * 7 6 5 10 10 C 1.50702 * 120.03681 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47190 * 83.10423 * 10 9 7 12 12 O 1.42896 * 109.46677 * 203.09936 * 10 9 7 13 13 C 1.50689 * 109.47446 * 323.10191 * 10 9 7 14 14 H 1.08008 * 119.99971 * 0.98201 * 13 10 9 15 15 C 1.37875 * 120.00327 * 180.98505 * 13 10 9 16 16 N 1.31508 * 119.99900 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00156 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47409 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46929 * 119.99716 * 17 15 13 20 20 H 1.48500 * 109.47182 * 239.99658 * 17 15 13 21 21 H 1.08998 * 109.47539 * 59.99568 * 1 2 3 22 22 H 1.09004 * 109.47249 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47264 * 299.99617 * 1 2 3 24 24 H 1.08004 * 120.00551 * 0.24732 * 4 3 2 25 25 H 1.08007 * 119.95655 * 179.97438 * 5 4 3 26 26 H 1.07998 * 119.95586 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.47270 * 59.99234 * 11 10 9 28 28 H 1.08998 * 109.47682 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47075 * 299.99932 * 11 10 9 30 30 H 0.96700 * 114.00101 * 60.00017 * 12 10 9 31 31 H 0.96998 * 120.00230 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2910 2.3753 -0.0057 5 6 1.9191 3.6055 -0.0119 6 6 3.2997 3.6786 -0.0115 7 6 4.0563 2.5189 -0.0058 8 9 5.4052 2.5925 -0.0059 9 6 3.4306 1.2845 0.0001 10 6 4.2533 0.0219 0.0070 11 6 4.6760 -0.3037 1.4409 12 8 3.4752 -1.0563 -0.5166 13 6 5.4799 0.2168 -0.8463 14 1 5.6553 1.1660 -1.3311 15 6 6.3784 -0.8163 -1.0083 16 7 6.1652 -1.9718 -0.4177 17 14 7.8986 -0.5748 -2.0667 18 1 7.9055 0.8049 -2.6157 19 1 9.1150 -0.7857 -1.2413 20 1 7.8837 -1.5519 -3.1849 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 0.2124 2.3196 -0.0061 25 1 1.3310 4.5114 -0.0167 26 1 3.7887 4.6415 -0.0159 27 1 3.7888 -0.4447 2.0582 28 1 5.2707 -1.2172 1.4460 29 1 5.2695 0.5188 1.8403 30 1 3.1722 -0.9181 -1.4244 31 1 6.7971 -2.6988 -0.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127003806.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:25 Heat of formation + Delta-G solvation = -95.266695 kcal Electronic energy + Delta-G solvation = -18000.435846 eV Core-core repulsion = 14969.497364 eV Total energy + Delta-G solvation = -3030.938483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.02696 -39.66859 -36.78757 -35.79832 -32.09282 -30.88746 -29.30762 -28.27528 -26.76900 -25.14106 -22.63523 -21.58722 -19.76464 -17.76549 -17.16273 -15.86205 -15.73152 -15.31060 -15.15747 -14.85996 -14.36275 -14.09716 -13.93183 -13.14262 -12.51722 -12.23544 -11.96957 -11.80114 -11.28425 -11.20939 -10.98457 -10.92792 -10.82293 -10.58818 -10.54795 -10.25509 -9.93729 -8.89554 -8.45290 -8.25244 -7.89184 -7.58718 -5.88322 -4.05745 1.72423 1.83263 3.33195 3.41289 3.46774 3.72107 4.13357 4.47909 4.99314 5.15128 5.29744 5.35504 5.40870 5.48615 5.50334 5.73191 5.87039 6.07028 6.19785 6.44656 6.66696 6.73885 6.78953 7.01259 7.13243 7.34249 7.64481 7.85968 7.92964 8.07907 8.32801 8.92746 9.49770 9.69602 11.12082 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.010435 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.320812 B = 2682.606553 C = 3353.727466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.276 6.276 3 C 0.152 3.848 4 C -0.234 4.234 5 C -0.074 4.074 6 C -0.207 4.207 7 C 0.153 3.847 8 F -0.116 7.116 9 C -0.149 4.149 10 C 0.294 3.706 11 C -0.115 4.115 12 O -0.537 6.537 13 C -0.558 4.558 14 H 0.067 0.933 15 C 0.081 3.919 16 N -0.859 5.859 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.048 0.952 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.015 0.985 28 H 0.092 0.908 29 H 0.037 0.963 30 H 0.345 0.655 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 7.469 0.819 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.187 6.187 3 C 0.106 3.894 4 C -0.253 4.253 5 C -0.092 4.092 6 C -0.226 4.226 7 C 0.133 3.867 8 F -0.094 7.094 9 C -0.151 4.151 10 C 0.254 3.746 11 C -0.173 4.173 12 O -0.339 6.339 13 C -0.596 4.596 14 H 0.085 0.915 15 C -0.124 4.124 16 N -0.495 5.495 17 Si 0.714 3.286 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.066 0.934 22 H 0.114 0.886 23 H 0.065 0.935 24 H 0.142 0.858 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.034 0.966 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.189 0.811 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.396 6.826 1.465 11.706 hybrid contribution 0.704 0.679 -1.137 1.499 sum -8.692 7.505 0.328 11.488 Atomic orbital electron populations 1.23018 0.80395 1.03418 1.00361 1.86485 1.19232 1.25293 1.87740 1.18684 0.91258 0.84411 0.95075 1.21154 0.99626 0.92467 1.12057 1.20502 0.93419 0.96842 0.98443 1.20971 0.94433 0.97314 1.09906 1.17162 0.77681 0.92717 0.99159 1.91536 1.28152 1.96829 1.92909 1.21024 0.91813 0.98448 1.03792 1.17496 0.86125 0.78107 0.92915 1.21543 0.98746 1.03017 0.93959 1.86543 1.72166 1.44442 1.30706 1.21863 1.06679 0.99569 1.31468 0.91482 1.24951 0.97356 0.94999 0.95094 1.70035 1.35301 1.02451 1.41710 0.86638 0.83299 0.78230 0.80403 1.19705 1.20986 1.21087 0.93352 0.88600 0.93462 0.85846 0.85906 0.85620 0.96604 0.88959 0.94421 0.81145 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.28 -5.20 7.81 -43.01 -0.34 -5.53 16 3 C 0.15 2.95 6.55 -39.23 -0.26 2.70 16 4 C -0.23 -3.69 9.04 -39.42 -0.36 -4.05 16 5 C -0.07 -1.10 10.04 -39.61 -0.40 -1.50 16 6 C -0.21 -3.53 10.02 -39.49 -0.40 -3.92 16 7 C 0.15 3.23 6.82 -39.44 -0.27 2.96 16 8 F -0.12 -2.68 14.05 2.25 0.03 -2.65 16 9 C -0.15 -3.35 4.78 -104.41 -0.50 -3.85 16 10 C 0.29 7.59 0.75 -92.93 -0.07 7.52 16 11 C -0.12 -2.99 8.61 37.16 0.32 -2.67 16 12 O -0.54 -14.09 9.96 -58.81 -0.59 -14.67 16 13 C -0.56 -15.50 6.96 -34.45 -0.24 -15.74 16 14 H 0.07 1.88 5.66 -52.48 -0.30 1.58 16 15 C 0.08 2.27 5.24 -17.82 -0.09 2.18 16 16 N -0.86 -24.96 10.90 55.43 0.60 -24.35 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 22 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.05 0.53 7.67 -51.93 -0.40 0.14 16 24 H 0.12 1.56 6.30 -52.48 -0.33 1.23 16 25 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 26 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.60 6.15 -51.93 -0.32 2.28 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.35 8.44 8.73 45.56 0.40 8.83 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 263.23 15.07 3.97 3.97 Total: -1.00 -31.23 263.23 -5.20 -36.43 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -2.59 Total: 5.20 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.27 Total: -15.07 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.60 Total: -24.35 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.92 Total: -20.21 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.03 Total: -2.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.23 -5.20 -36.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127003806.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.832 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds