Wall clock time and date at job start Mon Mar 30 2020 03:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35903 * 117.00232 * 2 1 4 4 C 1.38776 * 120.03799 * 359.72885 * 3 2 1 5 5 C 1.38133 * 119.99213 * 180.29767 * 4 3 2 6 6 C 1.38253 * 120.08061 * 359.95441 * 5 4 3 7 7 C 1.38471 * 120.08555 * 0.04201 * 6 5 4 8 8 F 1.35095 * 119.99531 * 179.97438 * 7 6 5 9 9 C 1.38389 * 120.00506 * 359.97438 * 7 6 5 10 10 C 1.50702 * 120.03681 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47190 * 83.10423 * 10 9 7 12 12 O 1.42896 * 109.46677 * 203.09936 * 10 9 7 13 13 C 1.50689 * 109.47446 * 323.10191 * 10 9 7 14 14 H 1.08008 * 119.99971 * 0.98201 * 13 10 9 15 15 C 1.37875 * 120.00327 * 180.98505 * 13 10 9 16 16 N 1.31508 * 119.99900 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00156 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47409 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.46929 * 119.99716 * 17 15 13 20 20 H 1.48500 * 109.47182 * 239.99658 * 17 15 13 21 21 H 1.08998 * 109.47539 * 59.99568 * 1 2 3 22 22 H 1.09004 * 109.47249 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47264 * 299.99617 * 1 2 3 24 24 H 1.08004 * 120.00551 * 0.24732 * 4 3 2 25 25 H 1.08007 * 119.95655 * 179.97438 * 5 4 3 26 26 H 1.07998 * 119.95586 * 180.02562 * 6 5 4 27 27 H 1.09000 * 109.47270 * 59.99234 * 11 10 9 28 28 H 1.08998 * 109.47682 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47075 * 299.99932 * 11 10 9 30 30 H 0.96700 * 114.00101 * 60.00017 * 12 10 9 31 31 H 0.96998 * 120.00230 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2910 2.3753 -0.0057 5 6 1.9191 3.6055 -0.0119 6 6 3.2997 3.6786 -0.0115 7 6 4.0563 2.5189 -0.0058 8 9 5.4052 2.5925 -0.0059 9 6 3.4306 1.2845 0.0001 10 6 4.2533 0.0219 0.0070 11 6 4.6760 -0.3037 1.4409 12 8 3.4752 -1.0563 -0.5166 13 6 5.4799 0.2168 -0.8463 14 1 5.6553 1.1660 -1.3311 15 6 6.3784 -0.8163 -1.0083 16 7 6.1652 -1.9718 -0.4177 17 14 7.8986 -0.5748 -2.0667 18 1 7.9055 0.8049 -2.6157 19 1 9.1150 -0.7857 -1.2413 20 1 7.8837 -1.5519 -3.1849 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 0.2124 2.3196 -0.0061 25 1 1.3310 4.5114 -0.0167 26 1 3.7887 4.6415 -0.0159 27 1 3.7888 -0.4447 2.0582 28 1 5.2707 -1.2172 1.4460 29 1 5.2695 0.5188 1.8403 30 1 3.1722 -0.9181 -1.4244 31 1 6.7971 -2.6988 -0.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127003806.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:25 Heat of formation + Delta-G solvation = -116.121017 kcal Electronic energy + Delta-G solvation = -18001.340158 eV Core-core repulsion = 14969.497364 eV Total energy + Delta-G solvation = -3031.842794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.65953 -41.04382 -38.25871 -37.53298 -34.21364 -32.58173 -30.63000 -29.99754 -27.95016 -27.24641 -24.21317 -22.95071 -21.55331 -19.15520 -19.10135 -17.36484 -17.32600 -16.81747 -16.66392 -16.53663 -16.03230 -15.71761 -15.28255 -14.93845 -14.35627 -13.61624 -13.36651 -13.29010 -13.08492 -12.95427 -12.83872 -12.65495 -12.55800 -12.40042 -12.11759 -11.90682 -11.75630 -10.79025 -10.58612 -10.13512 -9.42013 -9.02958 -8.00730 -6.24027 0.33325 0.48345 1.37473 1.39739 1.51383 2.42683 2.50161 2.76986 3.20056 3.66907 3.95464 4.01852 4.15553 4.37187 4.40920 4.50730 4.55779 4.64195 4.82228 4.90431 5.03092 5.19844 5.27210 5.35588 5.44848 5.57483 5.76407 5.93983 5.99355 6.25485 6.65582 6.80642 7.42144 7.63365 8.98672 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.010435 C = 0.008347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.320812 B = 2682.606553 C = 3353.727466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.310 6.310 3 C 0.143 3.857 4 C -0.221 4.221 5 C -0.054 4.054 6 C -0.204 4.204 7 C 0.120 3.880 8 F -0.140 7.140 9 C -0.191 4.191 10 C 0.288 3.712 11 C -0.106 4.106 12 O -0.548 6.548 13 C -0.565 4.565 14 H 0.059 0.941 15 C 0.032 3.968 16 N -0.889 5.889 17 Si 0.947 3.053 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.279 1.279 21 H 0.069 0.931 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.163 0.837 25 H 0.175 0.825 26 H 0.152 0.848 27 H 0.021 0.979 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.348 0.652 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 9.585 0.386 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.223 6.223 3 C 0.097 3.903 4 C -0.240 4.240 5 C -0.072 4.072 6 C -0.223 4.223 7 C 0.101 3.899 8 F -0.118 7.118 9 C -0.193 4.193 10 C 0.248 3.752 11 C -0.164 4.164 12 O -0.350 6.350 13 C -0.603 4.603 14 H 0.077 0.923 15 C -0.169 4.169 16 N -0.526 5.526 17 Si 0.772 3.228 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.205 1.205 21 H 0.088 0.912 22 H 0.125 0.875 23 H 0.085 0.915 24 H 0.181 0.819 25 H 0.192 0.808 26 H 0.170 0.830 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.191 0.809 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.451 8.949 1.030 14.570 hybrid contribution 1.184 0.066 -0.973 1.534 sum -10.268 9.015 0.057 13.664 Atomic orbital electron populations 1.23352 0.77435 1.04994 1.02228 1.86420 1.22398 1.25743 1.87722 1.18807 0.90493 0.85942 0.95082 1.21593 1.01399 0.91288 1.09700 1.21117 0.92665 0.98436 0.94936 1.21311 0.95425 0.96779 1.08749 1.17617 0.77074 0.93999 1.01253 1.91457 1.30002 1.96970 1.93419 1.20724 0.93336 0.97232 1.08028 1.17366 0.86297 0.79796 0.91748 1.21409 0.98405 1.01420 0.95161 1.86492 1.72262 1.45333 1.30921 1.22129 1.07760 0.99036 1.31365 0.92328 1.25675 1.00040 0.94856 0.96369 1.70163 1.36324 1.03097 1.43058 0.85704 0.80058 0.78057 0.78940 1.19615 1.20605 1.20459 0.91238 0.87476 0.91547 0.81910 0.80798 0.83048 0.95976 0.91783 0.94606 0.80874 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.81 113.37 1.11 1.44 16 2 O -0.31 -11.37 7.81 -69.91 -0.55 -11.91 16 3 C 0.14 5.35 6.55 22.50 0.15 5.49 16 4 C -0.22 -6.02 9.04 22.37 0.20 -5.82 16 5 C -0.05 -1.33 10.04 22.25 0.22 -1.10 16 6 C -0.20 -6.35 10.02 22.33 0.22 -6.12 16 7 C 0.12 5.06 6.82 22.36 0.15 5.21 16 8 F -0.14 -6.63 14.05 44.97 0.63 -6.00 16 9 C -0.19 -8.66 4.78 -19.73 -0.09 -8.75 16 10 C 0.29 15.33 0.75 -12.29 -0.01 15.32 16 11 C -0.11 -5.74 8.61 71.98 0.62 -5.12 16 12 O -0.55 -29.68 9.96 -126.44 -1.26 -30.94 16 13 C -0.56 -32.37 6.96 25.60 0.18 -32.19 16 14 H 0.06 3.39 5.66 -2.91 -0.02 3.38 16 15 C 0.03 1.87 5.24 84.66 0.44 2.31 16 16 N -0.89 -53.31 10.90 21.45 0.23 -53.08 16 17 Si 0.95 45.58 29.54 68.60 2.03 47.61 16 18 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H 0.07 1.28 7.65 -2.39 -0.02 1.26 16 22 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.07 1.25 7.67 -2.38 -0.02 1.23 16 24 H 0.16 3.11 6.30 -2.91 -0.02 3.09 16 25 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 26 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 3.78 6.15 -2.39 -0.01 3.76 16 29 H 0.03 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.35 17.65 8.73 -74.06 -0.65 17.01 16 31 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -70.46 263.23 4.80 -65.66 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.51 Total: 18.00 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.20 Total: -29.34 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.23 Total: -53.08 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.80 Total: -42.85 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.63 Total: -6.00 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -70.46 4.80 -65.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127003806.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.461 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds