Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46903 * 111.00408 * 176.04515 * 12 2 1 14 14 C 1.46897 * 111.00175 * 300.00375 * 12 2 1 15 15 C 1.53005 * 109.47498 * 169.99794 * 14 12 2 16 16 C 1.50698 * 109.46982 * 179.97438 * 15 14 12 17 17 N 1.29028 * 124.91397 * 89.70017 * 16 15 14 18 18 C 1.31784 * 117.12280 * 179.81336 * 17 16 15 19 19 C 1.33640 * 114.50148 * 0.46605 * 18 17 16 20 20 S 1.70977 * 124.91742 * 269.99541 * 16 15 14 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.46799 * 60.00117 * 13 12 2 26 26 H 1.08994 * 109.47282 * 180.02562 * 13 12 2 27 27 H 1.08999 * 109.46910 * 300.00279 * 13 12 2 28 28 H 1.09004 * 109.47033 * 289.99910 * 14 12 2 29 29 H 1.08999 * 109.47167 * 49.99404 * 14 12 2 30 30 H 1.08997 * 109.46462 * 299.99915 * 15 14 12 31 31 H 1.08999 * 109.47230 * 59.99648 * 15 14 12 32 32 H 1.08007 * 122.75053 * 180.22691 * 18 17 16 33 33 H 1.07998 * 126.04057 * 179.72476 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0265 2.4210 15 6 1.8628 -0.9045 3.6341 16 6 1.3801 -0.2209 4.8874 17 7 0.2026 -0.3582 5.3967 18 6 -0.0555 0.3109 6.5024 19 6 0.9576 1.0616 6.9452 20 16 2.3111 0.8544 5.8362 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 3.9187 0.2051 1.1591 26 1 3.8210 -1.3117 2.0857 27 1 3.8030 -1.3531 0.3066 28 1 2.0519 0.9345 2.5280 29 1 0.4723 0.1323 2.3563 30 1 1.3596 -1.8654 3.5270 31 1 2.9392 -1.0633 3.6988 32 1 -1.0090 0.2600 7.0071 33 1 0.9483 1.6854 7.8267 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157602871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = 49.874482 kcal Electronic energy + Delta-G solvation = -14913.449717 eV Core-core repulsion = 12487.310955 eV Total energy + Delta-G solvation = -2426.138762 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.63009 -37.24192 -33.48526 -31.92909 -29.38935 -28.58342 -26.10556 -24.56410 -23.85891 -21.74201 -19.81930 -19.30796 -17.92993 -16.27622 -15.65470 -15.21356 -14.65906 -14.50262 -14.04216 -13.67677 -13.30938 -12.81186 -12.49250 -12.22746 -11.81991 -11.52296 -11.29160 -11.07691 -10.88399 -10.69681 -10.31244 -10.09512 -10.03349 -9.85801 -9.55046 -9.39883 -8.90460 -8.79526 -8.40575 -7.20146 -5.99514 -4.04293 0.71399 1.36977 1.76080 2.85984 3.33406 3.37821 3.40594 4.17848 4.42903 4.93374 5.09811 5.30321 5.33294 5.37976 5.47617 5.61058 5.89187 6.09117 6.19369 6.27663 6.42467 6.46177 6.76891 6.89184 7.08847 7.17069 7.52959 7.72912 7.78229 7.83907 8.20818 8.32682 8.59529 9.01602 9.60595 11.07349 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.054369 B = 0.004870 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.879907 B = 5747.767908 C = 5966.445392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.536 5.536 13 C 0.034 3.966 14 C 0.060 3.940 15 C -0.045 4.045 16 C 0.073 3.927 17 N -0.477 5.477 18 C 0.042 3.958 19 C -0.273 4.273 20 S 0.108 5.892 21 H 0.008 0.992 22 H 0.035 0.965 23 H 0.085 0.915 24 H 0.261 0.739 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.174 0.826 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 0.444 16.135 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.261 5.261 13 C -0.115 4.115 14 C -0.071 4.071 15 C -0.086 4.086 16 C -0.205 4.205 17 N -0.192 5.192 18 C -0.110 4.110 19 C -0.412 4.412 20 S 0.361 5.639 21 H 0.027 0.973 22 H 0.055 0.945 23 H 0.103 0.897 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.191 0.809 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.579 0.139 15.652 15.863 hybrid contribution -0.288 0.510 -0.259 0.641 sum 2.292 0.650 15.392 15.576 Atomic orbital electron populations 1.21862 0.97672 0.99782 0.99874 1.19247 0.92384 0.91952 0.85686 0.98428 1.21113 1.31135 1.12312 0.89715 0.91840 1.24932 0.95197 0.95076 0.99022 1.69883 1.36867 1.23011 1.23520 0.86576 0.79036 0.79785 0.82086 1.20191 1.21387 1.20357 1.62112 1.09258 1.52730 1.01990 1.22275 0.88844 0.99195 1.01173 1.22056 1.01741 0.93757 0.89500 1.20427 1.01131 0.99814 0.87213 1.27334 0.92102 0.99555 1.01521 1.66328 1.17955 1.24014 1.10868 1.21842 1.00542 0.95426 0.93159 1.27012 0.97235 1.09983 1.06940 1.84054 1.18330 1.42480 1.18987 0.97272 0.94545 0.89662 0.92932 0.96938 0.93759 0.90450 0.96002 0.90043 0.87950 0.89823 0.80950 0.80866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.76 37.16 0.33 -3.01 16 2 C 0.21 5.43 2.06 -68.87 -0.14 5.29 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 4 C -0.50 -13.77 7.93 -34.44 -0.27 -14.05 16 5 H 0.06 1.71 6.39 -52.49 -0.34 1.38 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.54 -11.51 4.62 -236.29 -1.09 -12.60 16 13 C 0.03 0.64 9.05 60.07 0.54 1.19 16 14 C 0.06 1.10 4.76 -3.82 -0.02 1.09 16 15 C -0.04 -0.68 5.73 -27.88 -0.16 -0.84 16 16 C 0.07 1.07 6.64 -13.46 -0.09 0.98 16 17 N -0.48 -7.27 10.54 -11.86 -0.13 -7.40 16 18 C 0.04 0.50 11.35 -19.18 -0.22 0.29 16 19 C -0.27 -2.88 11.37 29.12 0.33 -2.55 16 20 S 0.11 1.27 23.18 -107.50 -2.49 -1.22 16 21 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.08 2.31 6.07 -51.93 -0.32 2.00 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.70 6.30 -51.93 -0.33 0.37 16 27 H 0.08 1.58 6.23 -51.93 -0.32 1.26 16 28 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.08 1.62 5.83 -51.93 -0.30 1.32 16 30 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.08 1.13 6.47 -51.93 -0.34 0.79 16 32 H 0.17 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -29.54 282.08 -8.00 -37.54 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.36 Total: -1.79 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 0.21 Total: -10.09 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.59 Total: -44.94 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.54 -8.00 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157602871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.419 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds