Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46903 * 111.00408 * 176.04515 * 12 2 1 14 14 C 1.46897 * 111.00175 * 300.00375 * 12 2 1 15 15 C 1.53005 * 109.47498 * 169.99794 * 14 12 2 16 16 C 1.50698 * 109.46982 * 179.97438 * 15 14 12 17 17 N 1.29028 * 124.91397 * 89.70017 * 16 15 14 18 18 C 1.31784 * 117.12280 * 179.81336 * 17 16 15 19 19 C 1.33640 * 114.50148 * 0.46605 * 18 17 16 20 20 S 1.70977 * 124.91742 * 269.99541 * 16 15 14 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.46799 * 60.00117 * 13 12 2 26 26 H 1.08994 * 109.47282 * 180.02562 * 13 12 2 27 27 H 1.08999 * 109.46910 * 300.00279 * 13 12 2 28 28 H 1.09004 * 109.47033 * 289.99910 * 14 12 2 29 29 H 1.08999 * 109.47167 * 49.99404 * 14 12 2 30 30 H 1.08997 * 109.46462 * 299.99915 * 15 14 12 31 31 H 1.08999 * 109.47230 * 59.99648 * 15 14 12 32 32 H 1.08007 * 122.75053 * 180.22691 * 18 17 16 33 33 H 1.07998 * 126.04057 * 179.72476 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0265 2.4210 15 6 1.8628 -0.9045 3.6341 16 6 1.3801 -0.2209 4.8874 17 7 0.2026 -0.3582 5.3967 18 6 -0.0555 0.3109 6.5024 19 6 0.9576 1.0616 6.9452 20 16 2.3111 0.8544 5.8362 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 3.9187 0.2051 1.1591 26 1 3.8210 -1.3117 2.0857 27 1 3.8030 -1.3531 0.3066 28 1 2.0519 0.9345 2.5280 29 1 0.4723 0.1323 2.3563 30 1 1.3596 -1.8654 3.5270 31 1 2.9392 -1.0633 3.6988 32 1 -1.0090 0.2600 7.0071 33 1 0.9483 1.6854 7.8267 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157602871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = 30.424829 kcal Electronic energy + Delta-G solvation = -14914.293117 eV Core-core repulsion = 12487.310955 eV Total energy + Delta-G solvation = -2426.982162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62982 -38.93056 -35.26596 -33.45439 -31.12079 -29.89322 -27.76666 -26.30633 -25.21314 -23.25827 -21.13123 -20.81198 -18.94299 -18.34027 -17.10559 -16.52920 -16.14458 -15.91347 -15.44428 -14.99280 -14.95063 -14.28183 -13.98681 -13.75070 -13.44988 -12.92700 -12.84569 -12.62268 -12.57347 -12.40788 -12.11493 -12.03249 -11.95404 -11.53720 -10.88552 -10.58181 -10.49756 -10.35014 -9.80026 -8.96638 -8.09860 -6.22060 -0.24125 0.44099 0.83137 1.44564 1.46767 1.54097 1.89396 2.43898 3.08671 3.19240 3.54548 4.01447 4.15073 4.30622 4.41158 4.50633 4.57952 4.63242 4.75009 4.82228 4.97286 5.03955 5.07919 5.11251 5.24059 5.31754 5.49576 5.73192 5.77733 6.24825 6.38335 6.70973 6.82947 6.92189 7.47155 8.96343 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.054369 B = 0.004870 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.879907 B = 5747.767908 C = 5966.445392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.217 3.783 3 H -0.037 1.037 4 C -0.519 4.519 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.543 5.543 13 C 0.036 3.964 14 C 0.066 3.934 15 C -0.031 4.031 16 C 0.039 3.961 17 N -0.506 5.506 18 C 0.018 3.982 19 C -0.252 4.252 20 S 0.137 5.863 21 H 0.024 0.976 22 H 0.031 0.969 23 H 0.060 0.940 24 H 0.261 0.739 25 H 0.008 0.992 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.197 0.803 33 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 0.175 17.660 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H -0.020 1.020 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.268 5.268 13 C -0.112 4.112 14 C -0.064 4.064 15 C -0.072 4.072 16 C -0.239 4.239 17 N -0.222 5.222 18 C -0.132 4.132 19 C -0.391 4.391 20 S 0.391 5.609 21 H 0.043 0.957 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.213 0.787 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.436 -0.141 17.194 17.535 hybrid contribution -0.557 0.667 -0.598 1.054 sum 2.880 0.526 16.597 16.853 Atomic orbital electron populations 1.21678 0.97644 0.99217 0.99435 1.19042 0.92431 0.90232 0.87325 1.02002 1.21413 1.31218 1.12406 0.90739 0.91809 1.25747 0.95336 0.95750 1.02032 1.70021 1.37817 1.24286 1.24121 0.85547 0.78789 0.78622 0.78281 1.19672 1.21133 1.19445 1.62041 1.10760 1.52314 1.01669 1.22300 0.87330 0.99198 1.02418 1.21989 1.00341 0.94408 0.89647 1.20186 1.02153 0.98610 0.86286 1.27105 0.92993 1.01525 1.02241 1.66302 1.18674 1.25037 1.12182 1.22243 1.02155 0.95944 0.92891 1.27490 0.95852 1.08717 1.07052 1.83911 1.17961 1.40796 1.18277 0.95670 0.94967 0.92106 0.92962 0.97361 0.89862 0.91959 0.96122 0.91962 0.88853 0.88002 0.78663 0.77319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.23 8.76 71.98 0.63 -5.60 16 2 C 0.22 11.29 2.06 44.17 0.09 11.39 16 3 H -0.04 -2.18 8.14 -2.39 -0.02 -2.20 16 4 C -0.52 -28.73 7.93 25.60 0.20 -28.53 16 5 H 0.06 3.45 6.39 -2.91 -0.02 3.43 16 6 C 0.01 0.55 5.30 84.65 0.45 0.99 16 7 N -0.92 -53.82 11.32 21.45 0.24 -53.58 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 N -0.54 -23.38 4.62 -901.48 -4.17 -27.55 16 13 C 0.04 1.34 9.05 127.69 1.16 2.49 16 14 C 0.07 2.44 4.76 86.31 0.41 2.85 16 15 C -0.03 -0.92 5.73 29.85 0.17 -0.75 16 16 C 0.04 1.08 6.64 88.52 0.59 1.67 16 17 N -0.51 -14.88 10.54 -191.44 -2.02 -16.90 16 18 C 0.02 0.39 11.35 83.66 0.95 1.34 16 19 C -0.25 -4.52 11.37 66.78 0.76 -3.76 16 20 S 0.14 2.91 23.18 -56.49 -1.31 1.60 16 21 H 0.02 1.16 6.20 -2.39 -0.01 1.14 16 22 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 3.40 6.07 -2.38 -0.01 3.39 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.08 2.45 6.30 -2.39 -0.02 2.43 16 27 H 0.06 2.52 6.23 -2.39 -0.01 2.50 16 28 H 0.02 0.76 8.12 -2.38 -0.02 0.74 16 29 H 0.06 2.51 5.83 -2.39 -0.01 2.50 16 30 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.10 2.54 6.47 -2.39 -0.02 2.52 16 32 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.21 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -64.19 282.08 1.28 -62.91 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.10 Total: 5.66 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 5.41 Total: -17.91 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -5.94 Total: -98.03 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.31 Total: 1.60 kcal Total: -64.19 1.28 -62.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157602871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.333 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds