Wall clock time and date at job start Mon Mar 30 2020 03:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47311 * 2 1 4 4 C 1.46898 * 111.00002 * 288.00017 * 3 2 1 5 5 C 1.50700 * 109.47176 * 160.36008 * 4 3 2 6 6 H 1.08000 * 120.00146 * 4.90503 * 5 4 3 7 7 C 1.37877 * 120.00205 * 184.89870 * 5 4 3 8 8 N 1.31513 * 120.00114 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99926 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47401 * 89.99955 * 9 7 5 11 11 H 1.48496 * 109.47363 * 210.00394 * 9 7 5 12 12 H 1.48505 * 109.46928 * 330.00198 * 9 7 5 13 13 C 1.46900 * 111.00355 * 164.04213 * 3 2 1 14 14 C 1.52998 * 109.47194 * 293.95657 * 13 3 2 15 15 C 1.50699 * 109.47086 * 179.97438 * 14 13 3 16 16 N 1.29031 * 124.91282 * 89.69894 * 15 14 13 17 17 C 1.31782 * 117.11964 * 179.81358 * 16 15 14 18 18 C 1.33641 * 114.50455 * 0.46948 * 17 16 15 19 19 S 1.70982 * 124.91914 * 269.99869 * 15 14 13 20 20 H 1.08996 * 109.47257 * 299.46225 * 1 2 3 21 21 H 1.09008 * 109.46925 * 59.45871 * 1 2 3 22 22 H 1.08999 * 109.47355 * 179.45967 * 1 2 3 23 23 H 1.08995 * 109.47250 * 240.00263 * 2 1 3 24 24 H 1.08997 * 109.47014 * 119.99844 * 2 1 3 25 25 H 1.08998 * 109.47129 * 280.36171 * 4 3 2 26 26 H 1.09001 * 109.47146 * 40.36208 * 4 3 2 27 27 H 0.97006 * 120.00024 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46938 * 53.95655 * 13 3 2 29 29 H 1.08997 * 109.47379 * 173.95076 * 13 3 2 30 30 H 1.09001 * 109.47176 * 299.99852 * 14 13 3 31 31 H 1.09004 * 109.47191 * 59.99720 * 14 13 3 32 32 H 1.08002 * 122.74876 * 180.22067 * 17 16 15 33 33 H 1.07996 * 126.03776 * 179.71407 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7956 2.0226 -1.3043 5 6 1.8470 3.5205 -1.1467 6 1 2.1061 3.9545 -0.1923 7 6 1.5633 4.3369 -2.2209 8 7 1.6087 5.6440 -2.0835 9 14 1.1147 3.5863 -3.8716 10 1 -0.3562 3.3960 -3.9455 11 1 1.5519 4.4933 -4.9631 12 1 1.7917 2.2727 -4.0185 13 6 3.4383 1.4419 0.3770 14 6 3.5972 0.9996 1.8331 15 6 5.0526 1.0573 2.2196 16 7 5.6430 2.0890 2.7217 17 6 6.9238 1.9683 3.0074 18 6 7.4451 0.7714 2.7217 19 16 6.1623 -0.2323 2.0497 20 1 -0.3633 0.5054 0.8947 21 1 -0.3633 0.5223 -0.8852 22 1 -0.3634 -1.0276 -0.0097 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.5698 1.7039 -2.0023 26 1 0.8180 1.7310 -1.6881 27 1 1.4095 6.2184 -2.8394 28 1 4.0128 0.7781 -0.2691 29 1 3.8033 2.4628 0.2655 30 1 3.0227 1.6634 2.4792 31 1 3.2322 -0.0214 1.9446 32 1 7.5056 2.7723 3.4335 33 1 8.4715 0.4724 2.8750 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159430707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:09 Heat of formation + Delta-G solvation = 47.004865 kcal Electronic energy + Delta-G solvation = -14853.743155 eV Core-core repulsion = 12427.479958 eV Total energy + Delta-G solvation = -2426.263198 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58268 -37.37353 -33.00062 -32.38863 -30.21947 -29.00906 -26.85750 -24.49460 -22.60415 -22.09483 -19.79237 -19.64928 -17.88185 -16.83306 -15.63237 -15.12997 -14.79214 -14.51439 -14.04991 -13.88237 -13.52431 -13.05258 -12.76720 -12.38129 -12.08385 -11.55314 -11.49852 -11.44389 -11.21958 -10.82791 -10.65242 -10.40515 -10.05342 -9.83127 -9.50147 -9.35086 -9.25970 -8.80528 -8.52500 -7.40492 -6.01054 -3.97702 0.75799 1.40654 1.78964 2.92476 3.29443 3.37167 3.38608 4.20042 4.44435 4.74846 5.13570 5.26431 5.31060 5.33415 5.48287 5.55894 5.58364 5.75673 5.86843 6.01583 6.15232 6.24248 6.37348 6.41163 6.59555 6.69250 6.86303 6.93613 7.65010 7.85055 7.90015 8.02276 8.69367 9.10139 9.60560 11.12314 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.025839 B = 0.006182 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.390773 B = 4527.833766 C = 5167.725453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.525 5.525 4 C 0.162 3.838 5 C -0.506 4.506 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.073 3.927 14 C -0.045 4.045 15 C 0.075 3.925 16 N -0.472 5.472 17 C 0.044 3.956 18 C -0.271 4.271 19 S 0.100 5.900 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.022 0.978 24 H 0.063 0.937 25 H -0.012 1.012 26 H 0.029 0.971 27 H 0.263 0.737 28 H 0.021 0.979 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.801 -13.800 7.742 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 N -0.249 5.249 4 C 0.036 3.964 5 C -0.544 4.544 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.057 4.057 14 C -0.087 4.087 15 C -0.204 4.204 16 N -0.186 5.186 17 C -0.107 4.107 18 C -0.410 4.410 19 S 0.353 5.647 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.005 0.995 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.140 -13.901 7.703 17.423 hybrid contribution 0.897 0.020 -1.209 1.505 sum 8.036 -13.881 6.494 17.304 Atomic orbital electron populations 1.21758 0.95343 1.00105 1.03043 1.22133 0.96228 0.90858 0.99324 1.61955 1.15659 1.14137 1.33166 1.20211 0.95370 0.96029 0.84761 1.21053 1.46355 0.88173 0.98829 0.90044 1.24897 0.95301 0.94712 0.98447 1.69899 1.49845 1.02832 1.31338 0.86910 0.79195 0.79436 0.84498 1.20127 1.21219 1.19406 1.21929 0.89796 1.02546 0.91460 1.20444 0.85777 1.03101 0.99338 1.27281 1.01885 0.91263 0.99959 1.66326 1.09370 1.28361 1.14572 1.21867 0.90286 0.97234 1.01345 1.26994 1.04355 0.98371 1.11312 1.83955 1.02194 1.19454 1.59086 0.91968 0.92348 0.93442 0.95952 0.91846 0.99476 0.95347 0.92728 0.96035 0.88867 0.87699 0.90086 0.80879 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.99 37.16 0.37 -1.88 16 2 C 0.04 0.71 5.55 -3.82 -0.02 0.69 16 3 N -0.52 -10.75 4.38 -236.08 -1.03 -11.78 16 4 C 0.16 3.93 3.65 -4.98 -0.02 3.91 16 5 C -0.51 -14.50 9.17 -34.44 -0.32 -14.82 16 6 H 0.08 2.57 7.89 -52.49 -0.41 2.15 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 9 Si 0.87 21.62 27.37 -169.99 -4.65 16.97 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.44 6.69 56.52 0.38 -6.06 16 13 C 0.07 1.36 4.77 -3.83 -0.02 1.35 16 14 C -0.05 -0.70 5.76 -27.88 -0.16 -0.86 16 15 C 0.07 1.13 6.64 -13.45 -0.09 1.04 16 16 N -0.47 -7.68 10.54 -11.86 -0.13 -7.81 16 17 C 0.04 0.57 11.35 -19.18 -0.22 0.35 16 18 C -0.27 -3.01 11.37 29.12 0.33 -2.67 16 19 S 0.10 1.19 23.18 -107.50 -2.49 -1.30 16 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 21 H 0.06 1.00 6.52 -51.92 -0.34 0.66 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 24 H 0.06 0.89 5.94 -51.93 -0.31 0.58 16 25 H -0.01 -0.31 7.40 -51.93 -0.38 -0.69 16 26 H 0.03 0.68 5.40 -51.93 -0.28 0.40 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 29 H 0.09 2.06 7.32 -51.93 -0.38 1.68 16 30 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 31 H 0.08 1.05 6.28 -51.93 -0.33 0.72 16 32 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 285.82 15.07 4.31 4.31 Total: -1.00 -31.74 285.82 -8.00 -39.74 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.54 Total: -1.97 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.24 Total: -11.01 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.39 Total: -46.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.65 Total: 16.97 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.49 Total: -1.30 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.74 -8.00 -39.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159430707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.749 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds