Wall clock time and date at job start Mon Mar 30 2020 03:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47311 * 2 1 4 4 C 1.46898 * 111.00002 * 288.00017 * 3 2 1 5 5 C 1.50700 * 109.47176 * 160.36008 * 4 3 2 6 6 H 1.08000 * 120.00146 * 4.90503 * 5 4 3 7 7 C 1.37877 * 120.00205 * 184.89870 * 5 4 3 8 8 N 1.31513 * 120.00114 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99926 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47401 * 89.99955 * 9 7 5 11 11 H 1.48496 * 109.47363 * 210.00394 * 9 7 5 12 12 H 1.48505 * 109.46928 * 330.00198 * 9 7 5 13 13 C 1.46900 * 111.00355 * 164.04213 * 3 2 1 14 14 C 1.52998 * 109.47194 * 293.95657 * 13 3 2 15 15 C 1.50699 * 109.47086 * 179.97438 * 14 13 3 16 16 N 1.29031 * 124.91282 * 89.69894 * 15 14 13 17 17 C 1.31782 * 117.11964 * 179.81358 * 16 15 14 18 18 C 1.33641 * 114.50455 * 0.46948 * 17 16 15 19 19 S 1.70982 * 124.91914 * 269.99869 * 15 14 13 20 20 H 1.08996 * 109.47257 * 299.46225 * 1 2 3 21 21 H 1.09008 * 109.46925 * 59.45871 * 1 2 3 22 22 H 1.08999 * 109.47355 * 179.45967 * 1 2 3 23 23 H 1.08995 * 109.47250 * 240.00263 * 2 1 3 24 24 H 1.08997 * 109.47014 * 119.99844 * 2 1 3 25 25 H 1.08998 * 109.47129 * 280.36171 * 4 3 2 26 26 H 1.09001 * 109.47146 * 40.36208 * 4 3 2 27 27 H 0.97006 * 120.00024 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46938 * 53.95655 * 13 3 2 29 29 H 1.08997 * 109.47379 * 173.95076 * 13 3 2 30 30 H 1.09001 * 109.47176 * 299.99852 * 14 13 3 31 31 H 1.09004 * 109.47191 * 59.99720 * 14 13 3 32 32 H 1.08002 * 122.74876 * 180.22067 * 17 16 15 33 33 H 1.07996 * 126.03776 * 179.71407 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7956 2.0226 -1.3043 5 6 1.8470 3.5205 -1.1467 6 1 2.1061 3.9545 -0.1923 7 6 1.5633 4.3369 -2.2209 8 7 1.6087 5.6440 -2.0835 9 14 1.1147 3.5863 -3.8716 10 1 -0.3562 3.3960 -3.9455 11 1 1.5519 4.4933 -4.9631 12 1 1.7917 2.2727 -4.0185 13 6 3.4383 1.4419 0.3770 14 6 3.5972 0.9996 1.8331 15 6 5.0526 1.0573 2.2196 16 7 5.6430 2.0890 2.7217 17 6 6.9238 1.9683 3.0074 18 6 7.4451 0.7714 2.7217 19 16 6.1623 -0.2323 2.0497 20 1 -0.3633 0.5054 0.8947 21 1 -0.3633 0.5223 -0.8852 22 1 -0.3634 -1.0276 -0.0097 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.5698 1.7039 -2.0023 26 1 0.8180 1.7310 -1.6881 27 1 1.4095 6.2184 -2.8394 28 1 4.0128 0.7781 -0.2691 29 1 3.8033 2.4628 0.2655 30 1 3.0227 1.6634 2.4792 31 1 3.2322 -0.0214 1.9446 32 1 7.5056 2.7723 3.4335 33 1 8.4715 0.4724 2.8750 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159430707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:08 Heat of formation + Delta-G solvation = 24.479524 kcal Electronic energy + Delta-G solvation = -14854.719927 eV Core-core repulsion = 12427.479958 eV Total energy + Delta-G solvation = -2427.239970 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64263 -38.91376 -34.86284 -33.94484 -31.68632 -30.40458 -28.47238 -25.77316 -24.12483 -23.63437 -21.24854 -20.82843 -19.01385 -18.91660 -16.94089 -16.43992 -16.35483 -16.03097 -15.40512 -15.23425 -14.91472 -14.56032 -14.32630 -14.02318 -13.50156 -13.08689 -12.88904 -12.73346 -12.48555 -12.42661 -12.24771 -12.02175 -11.88099 -11.48481 -11.35470 -10.76448 -10.56469 -10.35533 -9.79828 -9.01898 -8.27186 -6.30122 -0.24728 0.43693 0.80612 1.33568 1.35513 1.46127 1.89096 2.34424 2.98209 3.08713 3.45492 3.99894 4.10537 4.23360 4.26058 4.40308 4.47062 4.54736 4.57771 4.74796 4.81256 4.88397 5.05550 5.08820 5.11024 5.21664 5.25792 5.41713 5.60527 6.00944 6.38435 6.67672 6.76457 6.85360 7.32786 8.90198 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.025839 B = 0.006182 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.390773 B = 4527.833766 C = 5167.725453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.040 3.960 3 N -0.544 5.544 4 C 0.173 3.827 5 C -0.513 4.513 6 H 0.031 0.969 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.948 3.052 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.251 1.251 13 C 0.081 3.919 14 C -0.032 4.032 15 C 0.035 3.965 16 N -0.514 5.514 17 C 0.015 3.985 18 C -0.252 4.252 19 S 0.153 5.847 20 H 0.054 0.946 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.031 0.969 24 H 0.094 0.906 25 H -0.015 1.015 26 H 0.037 0.963 27 H 0.266 0.734 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.192 0.808 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.464 -17.128 7.212 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 N -0.268 5.268 4 C 0.046 3.954 5 C -0.552 4.552 6 H 0.049 0.951 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.771 3.229 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.175 1.175 13 C -0.049 4.049 14 C -0.073 4.073 15 C -0.242 4.242 16 N -0.229 5.229 17 C -0.135 4.135 18 C -0.390 4.390 19 S 0.406 5.594 20 H 0.073 0.927 21 H 0.056 0.944 22 H 0.102 0.898 23 H 0.049 0.951 24 H 0.112 0.888 25 H 0.002 0.998 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.209 0.791 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.799 -17.256 7.195 20.257 hybrid contribution 0.805 1.051 -0.922 1.613 sum 8.604 -16.205 6.273 19.390 Atomic orbital electron populations 1.21765 0.94585 1.02041 1.01667 1.22305 0.96855 0.88356 1.01190 1.61836 1.16854 1.17107 1.31028 1.19940 0.95514 0.93168 0.86783 1.21293 1.45838 0.91114 0.96943 0.95070 1.25894 0.95152 0.95028 1.03159 1.70073 1.51462 1.04716 1.32931 0.85706 0.79630 0.79092 0.78466 1.18624 1.20787 1.17491 1.21764 0.88940 1.00011 0.94205 1.20226 0.86762 1.04060 0.96237 1.27129 1.02278 0.92916 1.01881 1.66295 1.11292 1.29964 1.15382 1.22208 0.89587 0.98948 1.02733 1.27505 1.05749 0.97238 1.08556 1.83664 1.00817 1.17195 1.57742 0.92652 0.94416 0.89821 0.95065 0.88793 0.99757 0.94491 0.92506 0.94917 0.93784 0.89766 0.87068 0.79077 0.77140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.99 71.98 0.72 -3.38 16 2 C 0.04 1.23 5.55 86.30 0.48 1.71 16 3 N -0.54 -22.31 4.38 -900.82 -3.95 -26.26 16 4 C 0.17 8.41 3.65 85.56 0.31 8.72 16 5 C -0.51 -30.76 9.17 25.60 0.23 -30.53 16 6 H 0.03 2.11 7.89 -2.91 -0.02 2.09 16 7 C 0.00 0.26 5.47 84.65 0.46 0.73 16 8 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 9 Si 0.95 44.81 27.37 68.60 1.88 46.69 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.25 -11.05 6.69 99.48 0.67 -10.39 16 13 C 0.08 3.09 4.77 86.30 0.41 3.50 16 14 C -0.03 -0.98 5.76 29.85 0.17 -0.81 16 15 C 0.04 1.05 6.64 88.52 0.59 1.64 16 16 N -0.51 -16.98 10.54 -191.44 -2.02 -19.00 16 17 C 0.02 0.38 11.35 83.66 0.95 1.33 16 18 C -0.25 -4.86 11.37 66.78 0.76 -4.10 16 19 S 0.15 3.25 23.18 -56.49 -1.31 1.94 16 20 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.04 1.22 6.52 -2.38 -0.02 1.21 16 22 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 24 H 0.09 2.29 5.94 -2.39 -0.01 2.28 16 25 H -0.02 -0.74 7.40 -2.39 -0.02 -0.76 16 26 H 0.04 1.74 5.40 -2.39 -0.01 1.73 16 27 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 28 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 29 H 0.04 2.09 7.32 -2.39 -0.02 2.07 16 30 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.11 2.64 6.28 -2.38 -0.01 2.62 16 32 H 0.19 3.76 8.06 -2.91 -0.02 3.73 16 33 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -72.88 285.82 1.04 -71.84 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.05 Total: 6.98 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 5.09 Total: -21.18 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -5.67 Total: -106.27 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.31 Total: 1.94 kcal Total: -72.88 1.04 -71.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159430707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.317 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds