Wall clock time and date at job start Mon Mar 30 2020 03:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47310 * 2 1 4 4 C 1.46904 * 110.99749 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46540 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47453 * 55.00075 * 5 4 3 7 7 C 1.53002 * 109.47108 * 294.99742 * 5 4 3 8 8 C 1.50702 * 109.47021 * 175.00330 * 5 4 3 9 9 C 1.34855 * 122.10668 * 84.99586 * 8 5 4 10 10 S 1.71038 * 109.23385 * 179.78775 * 9 8 5 11 11 C 1.76083 * 90.39262 * 0.29595 * 10 9 8 12 12 C 1.39908 * 125.55576 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00278 * 179.69705 * 12 11 10 14 14 C 1.40247 * 119.99935 * 359.41551 * 12 11 10 15 15 N 1.30694 * 120.00119 * 0.27850 * 14 12 11 16 16 Si 1.86803 * 119.99956 * 180.27682 * 14 12 11 17 17 H 1.48496 * 109.47187 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47194 * 120.00582 * 16 14 12 19 19 H 1.48506 * 109.46902 * 240.00350 * 16 14 12 20 20 N 1.30459 * 122.10068 * 265.02181 * 8 5 4 21 21 H 1.09002 * 109.46882 * 59.99857 * 1 2 3 22 22 H 1.09004 * 109.47525 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47483 * 300.00497 * 1 2 3 24 24 H 1.09000 * 109.47483 * 239.99503 * 2 1 3 25 25 H 1.09002 * 109.46882 * 120.00143 * 2 1 3 26 26 H 1.00892 * 110.99720 * 303.95261 * 3 2 1 27 27 H 1.08996 * 109.47098 * 60.00125 * 4 3 2 28 28 H 1.08999 * 109.47223 * 299.99694 * 4 3 2 29 29 H 1.09003 * 109.46839 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.46915 * 300.00025 * 7 5 4 31 31 H 1.08994 * 109.46748 * 60.00518 * 7 5 4 32 32 H 1.07995 * 125.38192 * 0.02562 * 9 8 5 33 33 H 0.97005 * 120.00041 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9595 2.8796 0.0012 6 1 3.5103 3.4067 0.8430 7 6 3.5372 3.5530 -1.3061 8 6 5.4608 2.9215 0.1256 9 6 6.2721 2.8116 -0.9460 10 16 7.9006 2.9071 -0.4318 11 6 7.3752 3.0850 1.2394 12 6 8.2186 3.2295 2.3463 13 1 7.7981 3.3373 3.3352 14 6 9.6103 3.2284 2.1724 15 7 10.1192 3.0979 0.9758 16 14 10.7364 3.4135 3.6513 17 1 9.9180 3.5445 4.8834 18 1 11.6097 2.2175 3.7613 19 1 11.5769 4.6265 3.4847 20 7 6.0573 3.0658 1.2768 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6442 1.9012 -0.7813 27 1 3.8654 0.9200 -0.8891 28 1 3.8647 0.9203 0.8908 29 1 3.8734 4.5899 -1.3058 30 1 3.9864 3.0260 -2.1478 31 1 2.4514 3.5228 -1.3961 32 1 5.9452 2.6872 -1.9677 33 1 11.0818 3.0976 0.8555 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165381566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:24 Heat of formation + Delta-G solvation = 2.532086 kcal Electronic energy + Delta-G solvation = -14715.298615 eV Core-core repulsion = 12287.106932 eV Total energy + Delta-G solvation = -2428.191682 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.26382 -36.45372 -34.26972 -33.02840 -29.70942 -28.31384 -26.08757 -25.36092 -22.88003 -21.90322 -20.34875 -17.81646 -17.45066 -16.03548 -15.70618 -15.14872 -14.71359 -14.24912 -13.69737 -13.38207 -12.85102 -12.79828 -12.40782 -12.05087 -11.94525 -11.79817 -11.61331 -11.37305 -11.19145 -10.88688 -10.63730 -10.45399 -10.38646 -10.19878 -9.59433 -9.26086 -8.22166 -7.81985 -7.68814 -7.06929 -7.04866 -4.70501 2.54847 2.94768 3.02900 3.04120 3.58952 3.71323 4.06692 4.12494 4.46809 5.08149 5.16230 5.26526 5.45996 5.53098 5.61294 5.70416 5.81523 6.00170 6.01331 6.09779 6.16822 6.32222 6.42917 6.73918 6.75053 6.80146 6.84987 7.21745 7.35588 7.59805 7.68401 7.94668 8.34986 8.47795 9.79891 9.87946 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.040476 B = 0.005335 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.603184 B = 5247.284262 C = 5627.101329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.691 5.691 4 C 0.076 3.924 5 C -0.013 4.013 6 H 0.081 0.919 7 C -0.137 4.137 8 C 0.117 3.883 9 C -0.462 4.462 10 S 0.094 5.906 11 C 0.206 3.794 12 C -0.376 4.376 13 H 0.103 0.897 14 C 0.055 3.945 15 N -0.780 5.780 16 Si 0.940 3.060 17 H -0.256 1.256 18 H -0.269 1.269 19 H -0.269 1.269 20 N -0.598 5.598 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.336 0.664 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -2.775 -2.351 7.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.323 5.323 4 C -0.054 4.054 5 C -0.034 4.034 6 H 0.099 0.901 7 C -0.195 4.195 8 C -0.024 4.024 9 C -0.605 4.605 10 S 0.352 5.648 11 C -0.047 4.047 12 C -0.418 4.418 13 H 0.121 0.879 14 C -0.167 4.167 15 N -0.409 5.409 16 Si 0.763 3.237 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.194 1.194 20 N -0.320 5.320 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.154 0.846 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.036 -2.712 -1.847 6.870 hybrid contribution -0.185 -0.286 -0.678 0.758 sum -6.221 -2.998 -2.524 7.353 Atomic orbital electron populations 1.21766 0.95294 1.01340 1.02241 1.21899 0.95276 0.90142 1.00396 1.60560 1.08990 1.12967 1.49796 1.21917 0.85818 0.97050 1.00576 1.19518 0.91135 0.94723 0.98050 0.90080 1.21802 0.99356 1.00968 0.97385 1.19488 0.94671 0.99836 0.88399 1.25714 1.01612 1.31272 1.01950 1.84153 1.02217 1.72618 1.05793 1.23945 0.90606 0.95436 0.94705 1.19029 0.89400 1.38966 0.94431 0.87940 1.26177 0.99312 0.92934 0.98303 1.68843 1.15520 1.33587 1.22929 0.85694 0.78915 0.78826 0.80224 1.17910 1.19435 1.19424 1.67260 1.06425 1.32367 1.25950 0.93054 0.92496 0.91841 0.95728 0.91123 0.84583 0.95500 0.90886 0.92625 0.92997 0.93299 0.85549 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.17 37.16 0.38 -1.14 16 2 C 0.05 0.66 6.40 -3.82 -0.02 0.64 16 3 N -0.69 -10.22 6.50 -113.78 -0.74 -10.96 16 4 C 0.08 1.35 5.13 -3.82 -0.02 1.33 16 5 C -0.01 -0.25 2.99 -91.77 -0.27 -0.53 16 6 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 7 C -0.14 -2.28 8.45 37.16 0.31 -1.96 16 8 C 0.12 2.87 5.68 -84.37 -0.48 2.40 16 9 C -0.46 -11.31 10.09 29.53 0.30 -11.01 16 10 S 0.09 2.43 20.19 -107.50 -2.17 0.26 16 11 C 0.21 5.74 7.14 -16.91 -0.12 5.62 16 12 C -0.38 -9.90 9.45 -38.20 -0.36 -10.26 16 13 H 0.10 2.62 7.85 -52.49 -0.41 2.21 16 14 C 0.06 1.31 5.50 -17.28 -0.10 1.21 16 15 N -0.78 -18.95 10.67 55.56 0.59 -18.36 16 16 Si 0.94 17.64 29.56 -169.99 -5.03 12.62 16 17 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 18 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 N -0.60 -16.45 10.68 -9.33 -0.10 -16.55 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.34 4.46 6.98 -39.30 -0.27 4.19 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.85 6.86 -51.93 -0.36 0.50 16 31 H 0.05 0.67 6.68 -51.93 -0.35 0.32 16 32 H 0.13 2.85 6.89 -52.49 -0.36 2.48 16 33 H 0.30 6.41 8.29 -40.82 -0.34 6.07 16 LS Contribution 286.75 15.07 4.32 4.32 Total: -1.00 -28.17 286.75 -8.19 -36.36 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.69 Total: 6.00 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.38 Total: -13.71 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.25 Total: -45.86 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.17 Total: 0.26 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.17 -8.19 -36.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165381566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.895 kcal (2) G-P(sol) polarization free energy of solvation -28.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds