Wall clock time and date at job start Mon Mar 30 2020 03:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47310 * 2 1 4 4 C 1.46904 * 110.99749 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46540 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47453 * 55.00075 * 5 4 3 7 7 C 1.53002 * 109.47108 * 294.99742 * 5 4 3 8 8 C 1.50702 * 109.47021 * 175.00330 * 5 4 3 9 9 C 1.34855 * 122.10668 * 84.99586 * 8 5 4 10 10 S 1.71038 * 109.23385 * 179.78775 * 9 8 5 11 11 C 1.76083 * 90.39262 * 0.29595 * 10 9 8 12 12 C 1.39908 * 125.55576 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00278 * 179.69705 * 12 11 10 14 14 C 1.40247 * 119.99935 * 359.41551 * 12 11 10 15 15 N 1.30694 * 120.00119 * 0.27850 * 14 12 11 16 16 Si 1.86803 * 119.99956 * 180.27682 * 14 12 11 17 17 H 1.48496 * 109.47187 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47194 * 120.00582 * 16 14 12 19 19 H 1.48506 * 109.46902 * 240.00350 * 16 14 12 20 20 N 1.30459 * 122.10068 * 265.02181 * 8 5 4 21 21 H 1.09002 * 109.46882 * 59.99857 * 1 2 3 22 22 H 1.09004 * 109.47525 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47483 * 300.00497 * 1 2 3 24 24 H 1.09000 * 109.47483 * 239.99503 * 2 1 3 25 25 H 1.09002 * 109.46882 * 120.00143 * 2 1 3 26 26 H 1.00892 * 110.99720 * 303.95261 * 3 2 1 27 27 H 1.08996 * 109.47098 * 60.00125 * 4 3 2 28 28 H 1.08999 * 109.47223 * 299.99694 * 4 3 2 29 29 H 1.09003 * 109.46839 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.46915 * 300.00025 * 7 5 4 31 31 H 1.08994 * 109.46748 * 60.00518 * 7 5 4 32 32 H 1.07995 * 125.38192 * 0.02562 * 9 8 5 33 33 H 0.97005 * 120.00041 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9595 2.8796 0.0012 6 1 3.5103 3.4067 0.8430 7 6 3.5372 3.5530 -1.3061 8 6 5.4608 2.9215 0.1256 9 6 6.2721 2.8116 -0.9460 10 16 7.9006 2.9071 -0.4318 11 6 7.3752 3.0850 1.2394 12 6 8.2186 3.2295 2.3463 13 1 7.7981 3.3373 3.3352 14 6 9.6103 3.2284 2.1724 15 7 10.1192 3.0979 0.9758 16 14 10.7364 3.4135 3.6513 17 1 9.9180 3.5445 4.8834 18 1 11.6097 2.2175 3.7613 19 1 11.5769 4.6265 3.4847 20 7 6.0573 3.0658 1.2768 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6442 1.9012 -0.7813 27 1 3.8654 0.9200 -0.8891 28 1 3.8647 0.9203 0.8908 29 1 3.8734 4.5899 -1.3058 30 1 3.9864 3.0260 -2.1478 31 1 2.4514 3.5228 -1.3961 32 1 5.9452 2.6872 -1.9677 33 1 11.0818 3.0976 0.8555 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165381566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:23 Heat of formation + Delta-G solvation = -16.021591 kcal Electronic energy + Delta-G solvation = -14716.103162 eV Core-core repulsion = 12287.106932 eV Total energy + Delta-G solvation = -2428.996230 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.05941 -37.88027 -36.07516 -34.50495 -31.11336 -29.94810 -28.00170 -26.77155 -24.57122 -22.99777 -22.03630 -19.73613 -19.30746 -17.74768 -17.11526 -16.87582 -16.08796 -15.49854 -15.25965 -14.84925 -14.42495 -14.30232 -14.08447 -13.72910 -13.58404 -13.01941 -12.86803 -12.69132 -12.48495 -12.35908 -12.10607 -11.99044 -11.91415 -11.77292 -11.31597 -11.13838 -9.83601 -9.73523 -9.42812 -9.06879 -8.88716 -6.70531 0.65906 1.39771 1.49257 1.56864 1.59782 2.06357 2.21623 2.29167 3.09600 3.30510 3.94715 4.05521 4.10568 4.28814 4.38308 4.50330 4.61160 4.66933 4.83313 4.89350 4.95341 4.96323 5.01832 5.10872 5.18018 5.31440 5.33873 5.49020 5.77818 5.96221 6.01219 6.40999 6.46640 6.52485 7.86204 8.02829 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.040476 B = 0.005335 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.603184 B = 5247.284262 C = 5627.101329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 N -0.691 5.691 4 C 0.091 3.909 5 C -0.011 4.011 6 H 0.066 0.934 7 C -0.127 4.127 8 C 0.108 3.892 9 C -0.470 4.470 10 S 0.075 5.925 11 C 0.172 3.828 12 C -0.402 4.402 13 H 0.100 0.900 14 C 0.020 3.980 15 N -0.798 5.798 16 Si 1.019 2.981 17 H -0.256 1.256 18 H -0.257 1.257 19 H -0.256 1.256 20 N -0.632 5.632 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.348 0.652 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 -2.939 -2.406 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.325 5.325 4 C -0.039 4.039 5 C -0.032 4.032 6 H 0.085 0.915 7 C -0.185 4.185 8 C -0.032 4.032 9 C -0.613 4.613 10 S 0.333 5.667 11 C -0.079 4.079 12 C -0.445 4.445 13 H 0.118 0.882 14 C -0.200 4.200 15 N -0.426 5.426 16 Si 0.837 3.163 17 H -0.179 1.179 18 H -0.181 1.181 19 H -0.180 1.180 20 N -0.356 5.356 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.168 0.832 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.293 -2.881 -1.947 7.189 hybrid contribution -0.097 -0.251 -0.664 0.716 sum -6.390 -3.132 -2.611 7.580 Atomic orbital electron populations 1.21714 0.92986 1.02645 1.02542 1.22000 0.97121 0.88725 1.00203 1.60493 1.06727 1.14679 1.50561 1.21589 0.87914 0.95235 0.99139 1.19584 0.88066 0.96215 0.99372 0.91540 1.21729 1.01557 0.99907 0.95328 1.20142 0.97042 0.98376 0.87626 1.25856 1.00736 1.31912 1.02818 1.83942 1.03729 1.73713 1.05329 1.24429 0.91279 0.96302 0.95928 1.19399 0.91014 1.39966 0.94104 0.88212 1.27217 0.99703 0.91458 1.01625 1.68866 1.16921 1.31968 1.24832 0.84578 0.76475 0.79547 0.75740 1.17911 1.18068 1.18034 1.67334 1.06670 1.34009 1.27554 0.91918 0.90738 0.92332 0.95133 0.92157 0.83230 0.95565 0.93734 0.93484 0.92663 0.89868 0.83677 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.17 71.98 0.73 -1.80 16 2 C 0.05 1.15 6.40 86.30 0.55 1.71 16 3 N -0.69 -19.49 6.50 -513.89 -3.34 -22.83 16 4 C 0.09 3.25 5.13 86.30 0.44 3.69 16 5 C -0.01 -0.43 2.99 -11.54 -0.03 -0.47 16 6 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 7 C -0.13 -4.04 8.45 71.98 0.61 -3.43 16 8 C 0.11 5.42 5.68 41.99 0.24 5.65 16 9 C -0.47 -23.29 10.09 67.04 0.68 -22.62 16 10 S 0.08 3.98 20.19 -56.49 -1.14 2.84 16 11 C 0.17 9.89 7.14 85.09 0.61 10.49 16 12 C -0.40 -21.66 9.45 23.16 0.22 -21.44 16 13 H 0.10 5.24 7.85 -2.91 -0.02 5.22 16 14 C 0.02 0.96 5.50 85.35 0.47 1.43 16 15 N -0.80 -38.52 10.67 21.88 0.23 -38.29 16 16 Si 1.02 35.04 29.56 68.60 2.03 37.07 16 17 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 18 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 19 H -0.26 -8.27 7.11 99.48 0.71 -7.57 16 20 N -0.63 -35.96 10.68 -183.44 -1.96 -37.92 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.35 8.37 6.98 -89.70 -0.63 7.74 16 27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.71 6.86 -2.39 -0.02 1.69 16 31 H 0.08 2.04 6.68 -2.39 -0.02 2.03 16 32 H 0.15 6.47 6.89 -2.91 -0.02 6.45 16 33 H 0.31 13.10 8.29 -92.70 -0.77 12.33 16 Total: -1.00 -62.03 286.75 0.81 -61.22 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.48 Total: 24.68 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 4.51 Total: -26.77 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -5.06 Total: -99.03 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.14 Total: 2.84 kcal Total: -62.03 0.81 -61.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165381566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.196 kcal (2) G-P(sol) polarization free energy of solvation -62.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds