Wall clock time and date at job start Mon Mar 30 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39624 * 2 1 4 4 N 1.30502 * 108.70054 * 179.76560 * 3 2 1 5 5 C 1.34127 * 109.25683 * 0.38692 * 4 3 2 6 6 C 1.34672 * 108.01948 * 359.61488 * 5 4 3 7 7 C 1.50698 * 126.59327 * 180.25090 * 6 5 4 8 8 O 1.42903 * 109.47133 * 4.97384 * 7 6 5 9 9 Si 1.63095 * 114.00039 * 209.99840 * 8 7 6 10 10 C 1.86305 * 109.46877 * 60.00230 * 9 8 7 11 11 C 1.86298 * 109.46947 * 180.02562 * 9 8 7 12 12 C 1.86300 * 109.47459 * 300.00336 * 9 8 7 13 13 C 1.50703 * 109.47235 * 124.97602 * 7 6 5 14 14 N 1.27943 * 119.99699 * 130.00065 * 13 7 6 15 15 Si 1.86798 * 119.99844 * 310.00090 * 13 7 6 16 16 H 1.48493 * 109.47402 * 59.99975 * 15 13 7 17 17 H 1.48503 * 109.46952 * 179.97438 * 15 13 7 18 18 H 1.48500 * 109.47153 * 299.99706 * 15 13 7 19 19 H 1.09000 * 109.46815 * 269.99628 * 1 2 3 20 20 H 1.08996 * 109.47385 * 29.99737 * 1 2 3 21 21 H 1.08994 * 109.47108 * 149.99804 * 1 2 3 22 22 H 1.08003 * 125.65418 * 0.02562 * 3 2 1 23 23 H 1.08002 * 125.99481 * 179.88589 * 5 4 3 24 24 H 1.08999 * 109.46866 * 244.97490 * 7 6 5 25 25 H 1.09003 * 109.46919 * 60.00158 * 10 9 8 26 26 H 1.09002 * 109.46932 * 179.97438 * 10 9 8 27 27 H 1.08992 * 109.47482 * 299.99609 * 10 9 8 28 28 H 1.09003 * 109.47204 * 60.00609 * 11 9 8 29 29 H 1.09002 * 109.47076 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.47607 * 300.00306 * 11 9 8 31 31 H 1.09002 * 109.46745 * 59.99881 * 12 9 8 32 32 H 1.08994 * 109.46962 * 180.02562 * 12 9 8 33 33 H 1.09003 * 109.46696 * 299.99943 * 12 9 8 34 34 H 0.97002 * 120.00012 * 180.02562 * 14 13 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0051 5 6 3.5461 -0.6504 -0.0001 6 6 2.2773 -1.1018 -0.0001 7 6 1.8364 -2.5429 0.0003 8 8 2.9805 -3.3910 0.1175 9 14 2.8078 -4.8418 -0.6073 10 6 2.4917 -4.5934 -2.4264 11 6 4.3640 -5.8399 -0.3774 12 6 1.3703 -5.7495 0.1545 13 6 0.9105 -2.7846 1.1645 14 7 -0.2138 -3.3659 0.9776 15 14 1.4044 -2.2356 2.8803 16 1 1.6146 -0.7656 2.8884 17 1 0.3280 -2.5865 3.8413 18 1 2.6629 -2.9177 3.2752 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8899 -0.5138 22 1 1.9334 2.1144 0.0004 23 1 4.4369 -1.2611 0.0005 24 1 1.3145 -2.7633 -0.9309 25 1 3.3328 -4.0624 -2.8722 26 1 2.3767 -5.5631 -2.9109 27 1 1.5811 -4.0097 -2.5606 28 1 4.5485 -5.9853 0.6870 29 1 4.2487 -6.8094 -0.8622 30 1 5.2054 -5.3091 -0.8228 31 1 0.4597 -5.1656 0.0204 32 1 1.2553 -6.7192 -0.3296 33 1 1.5553 -5.8948 1.2189 34 1 -0.8100 -3.5212 1.7269 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203576656.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:17 Heat of formation + Delta-G solvation = 20.431977 kcal Electronic energy + Delta-G solvation = -16240.665278 eV Core-core repulsion = 13720.047630 eV Total energy + Delta-G solvation = -2520.617647 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.10550 -39.01770 -36.08100 -34.84946 -31.56114 -29.46976 -28.51858 -28.31365 -27.81472 -27.35332 -22.48381 -22.16324 -20.65831 -18.77110 -18.07385 -17.05360 -16.69337 -16.07537 -15.85976 -14.99260 -14.67550 -14.37043 -14.23811 -14.05327 -13.77249 -13.73079 -13.65692 -13.27517 -13.21643 -13.12007 -13.03661 -12.89526 -12.63319 -12.23559 -11.84075 -11.64823 -10.92918 -10.67415 -10.53897 -10.45093 -10.10634 -9.31826 0.43908 0.91598 0.99500 1.25238 1.31260 1.59488 1.83597 1.93953 1.99863 2.11111 2.22399 2.53096 3.29822 3.65090 3.93629 3.98401 4.08084 4.35571 4.39583 4.57814 4.67849 4.76418 4.77277 4.79062 4.81544 4.84251 4.87135 4.95577 5.10783 5.43035 5.56990 5.64487 5.72741 5.78671 6.28451 6.60070 7.13826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.453 5.453 3 C 0.191 3.809 4 N -0.539 5.539 5 C -0.012 4.012 6 C -0.046 4.046 7 C 0.236 3.764 8 O -0.618 6.618 9 Si 1.294 2.706 10 C -0.515 4.515 11 C -0.478 4.478 12 C -0.524 4.524 13 C -0.028 4.028 14 N -0.598 5.598 15 Si 0.935 3.065 16 H -0.251 1.251 17 H -0.240 1.240 18 H -0.242 1.242 19 H 0.084 0.916 20 H 0.118 0.882 21 H 0.094 0.906 22 H 0.239 0.761 23 H 0.176 0.824 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -0.463 -0.024 5.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.137 5.137 3 C -0.092 4.092 4 N -0.258 5.258 5 C -0.160 4.160 6 C -0.161 4.161 7 C 0.176 3.824 8 O -0.573 6.573 9 Si 1.430 2.570 10 C -0.616 4.616 11 C -0.584 4.584 12 C -0.626 4.626 13 C -0.279 4.279 14 N -0.215 5.215 15 Si 0.753 3.247 16 H -0.175 1.175 17 H -0.162 1.162 18 H -0.165 1.165 19 H 0.102 0.898 20 H 0.136 0.864 21 H 0.112 0.888 22 H 0.255 0.745 23 H 0.193 0.807 24 H 0.121 0.879 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.657 0.082 0.126 4.660 hybrid contribution -0.734 -0.824 0.384 1.168 sum -5.391 -0.742 0.510 5.466 Atomic orbital electron populations 1.22464 0.74501 1.06847 1.04789 1.45385 1.08780 1.05637 1.53910 1.25661 0.85036 0.94706 1.03757 1.70330 1.21292 1.12670 1.21479 1.22282 0.96921 0.90542 1.06231 1.20786 0.91755 0.89209 1.14380 1.18374 0.83370 0.84358 0.96251 1.85338 1.42926 1.46040 1.83042 0.76628 0.65050 0.53865 0.61480 1.27031 1.04982 1.05162 1.24460 1.26426 1.16811 1.09862 1.05256 1.27260 1.17843 1.10174 1.07299 1.30620 0.95468 0.95116 1.06660 1.68036 1.04346 1.07101 1.41996 0.85562 0.82430 0.81820 0.74905 1.17498 1.16245 1.16513 0.89751 0.86403 0.88751 0.74544 0.80685 0.87918 0.91233 0.90338 0.91321 0.90988 0.89784 0.90795 0.89386 0.90756 0.91821 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.43 10.18 127.77 1.30 0.87 16 2 N -0.45 0.00 3.15 -537.90 -1.70 -1.69 16 3 C 0.19 0.43 12.56 180.26 2.26 2.69 16 4 N -0.54 -5.19 11.25 -200.31 -2.25 -7.44 16 5 C -0.01 -0.09 11.22 83.52 0.94 0.85 16 6 C -0.05 -0.16 4.84 40.95 0.20 0.04 16 7 C 0.24 0.05 2.01 29.10 0.06 0.11 16 8 O -0.62 -0.50 7.40 -148.98 -1.10 -1.61 16 9 Si 1.29 -3.47 12.68 68.60 0.87 -2.60 16 10 C -0.51 0.83 8.56 113.37 0.97 1.80 16 11 C -0.48 0.69 8.65 113.37 0.98 1.67 16 12 C -0.52 0.80 7.98 113.37 0.90 1.70 16 13 C -0.03 0.04 3.04 88.68 0.27 0.30 16 14 N -0.60 2.02 11.40 24.11 0.27 2.30 16 15 Si 0.94 1.07 28.19 68.60 1.93 3.01 16 16 H -0.25 -1.03 7.11 99.48 0.71 -0.32 16 17 H -0.24 0.15 7.11 99.48 0.71 0.85 16 18 H -0.24 -1.03 7.11 99.48 0.71 -0.32 16 19 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 20 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 21 H 0.09 -0.79 7.73 -2.39 -0.02 -0.81 16 22 H 0.24 -1.42 8.06 -2.91 -0.02 -1.45 16 23 H 0.18 1.13 7.88 -2.91 -0.02 1.11 16 24 H 0.10 -0.27 6.12 -2.39 -0.01 -0.28 16 25 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 26 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 27 H 0.07 -0.12 7.10 -2.39 -0.02 -0.14 16 28 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 29 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 31 H 0.09 -0.09 5.48 -2.39 -0.01 -0.10 16 32 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 33 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 34 H 0.36 -2.26 8.23 -92.71 -0.76 -3.02 16 Total: 0.00 -12.70 287.07 6.99 -5.72 By element: Atomic # 1 Polarization: -8.80 SS G_CDS: 1.08 Total: -7.72 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 7.89 Total: 10.04 kcal Atomic # 7 Polarization: -3.17 SS G_CDS: -3.67 Total: -6.84 kcal Atomic # 8 Polarization: -0.50 SS G_CDS: -1.10 Total: -1.61 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.80 Total: 0.41 kcal Total: -12.70 6.99 -5.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203576656.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.147 kcal (2) G-P(sol) polarization free energy of solvation -12.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds