Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48495 * 109.47097 * 240.00445 * 3 2 1 5 5 H 1.48493 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46730 * 120.00675 * 3 2 1 7 7 C 1.37878 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47187 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46904 * 179.97438 * 10 9 7 12 12 N 1.29019 * 126.43933 * 270.17387 * 11 10 9 13 13 N 1.28737 * 108.80722 * 180.25054 * 12 11 10 14 14 N 1.28838 * 109.39931 * 359.74514 * 13 12 11 15 15 C 1.31077 * 107.99224 * 0.02562 * 14 13 12 16 16 C 1.50696 * 126.66111 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47055 * 90.02224 * 16 15 14 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 15 19 19 O 1.20826 * 119.99541 * 0.02562 * 18 17 16 20 20 O 1.34221 * 120.00092 * 180.02562 * 18 17 16 21 21 H 0.96999 * 120.00159 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47298 * 60.00074 * 9 7 2 23 23 H 1.09009 * 109.46990 * 300.00275 * 9 7 2 24 24 H 1.08996 * 109.47407 * 59.99569 * 10 9 7 25 25 H 1.09005 * 109.46628 * 299.99354 * 10 9 7 26 26 H 1.09001 * 109.47328 * 330.02494 * 16 15 14 27 27 H 1.09004 * 109.47043 * 210.02305 * 16 15 14 28 28 H 1.09001 * 109.46832 * 59.99966 * 17 16 15 29 29 H 1.09000 * 109.47611 * 300.00263 * 17 16 15 30 30 H 0.96705 * 117.00192 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 0.0001 12 7 1.1271 -5.5925 1.0383 13 7 0.5191 -6.6584 0.6489 14 7 0.5005 -6.6942 -0.6388 15 6 1.1130 -5.6236 -1.0825 16 6 1.3321 -5.2450 -2.5246 17 6 0.1541 -4.4008 -3.0148 18 6 0.3735 -4.0215 -4.4568 19 8 1.3697 -4.3892 -5.0332 20 8 -0.5377 -3.2754 -5.1006 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8718 -3.6044 -0.8906 26 1 1.4086 -6.1482 -3.1298 27 1 2.2535 -4.6692 -2.6131 28 1 0.0776 -3.4975 -2.4095 29 1 -0.7673 -4.9764 -2.9263 30 1 -0.3534 -3.0578 -6.0247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213257063.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = 3.434077 kcal Electronic energy + Delta-G solvation = -16971.820515 eV Core-core repulsion = 13997.374732 eV Total energy + Delta-G solvation = -2974.445783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.78292 -40.23614 -36.32589 -35.92109 -34.42782 -33.28759 -31.16021 -30.24437 -26.33575 -25.64065 -23.20231 -22.39878 -21.48427 -20.41017 -18.20580 -17.46920 -16.66137 -16.33251 -16.26342 -15.91723 -14.70160 -14.48026 -14.40054 -13.47428 -13.34549 -12.81174 -12.64700 -12.30783 -12.04596 -11.84084 -11.54785 -11.29906 -11.15222 -11.14696 -10.80250 -10.65947 -10.59104 -10.40554 -9.90818 -9.63722 -9.52628 -8.66442 -6.31318 -4.38823 1.62176 2.19722 2.46981 2.54459 3.05542 3.16746 3.23009 3.24275 4.19486 4.25729 4.59209 4.66897 4.94043 5.06164 5.25536 5.35083 5.47243 5.66440 5.77680 5.81496 5.87126 6.02043 6.16452 6.46281 6.56148 7.15281 7.23094 7.61360 7.86686 7.91890 8.65197 8.99563 9.28243 10.79397 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.008512 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.861203 B = 3288.822406 C = 4598.110435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.014 3.986 10 C 0.105 3.895 11 N -0.282 5.282 12 N -0.092 5.092 13 N -0.095 5.095 14 N -0.310 5.310 15 C 0.173 3.827 16 C -0.020 4.020 17 C -0.119 4.119 18 C 0.491 3.509 19 O -0.521 6.521 20 O -0.512 6.512 21 H 0.267 0.733 22 H 0.027 0.973 23 H 0.032 0.968 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.114 0.886 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -5.304 -7.888 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.081 0.919 9 C -0.024 4.024 10 C -0.014 4.014 11 N -0.084 5.084 12 N -0.078 5.078 13 N -0.088 5.088 14 N -0.161 5.161 15 C -0.105 4.105 16 C -0.061 4.061 17 C -0.158 4.158 18 C 0.334 3.666 19 O -0.409 6.409 20 O -0.323 6.323 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.129 0.871 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.133 0.867 30 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.167 -6.247 -6.578 9.146 hybrid contribution 0.896 1.871 -1.104 2.350 sum 2.063 -4.376 -7.682 9.079 Atomic orbital electron populations 1.69933 1.06160 1.27567 1.48576 1.24978 0.94905 0.99546 0.94384 0.86520 0.79540 0.82355 0.78881 1.19960 1.21034 1.19938 1.20833 0.93146 0.89681 1.53676 0.91897 1.19535 0.93826 0.90026 0.98999 1.22978 0.96136 0.77290 1.05010 1.49049 1.36243 1.19631 1.03486 1.78847 1.13038 1.02496 1.13381 1.78516 1.14912 1.11708 1.03640 1.74877 1.18790 1.18510 1.03922 1.25657 0.99716 0.91017 0.94121 1.19825 0.99129 1.02061 0.85049 1.21417 1.00984 1.03686 0.89707 1.23178 0.79814 0.73947 0.89634 1.90718 1.29020 1.52505 1.68700 1.84560 1.50176 1.66012 1.31580 0.92336 0.95502 0.94945 0.87810 0.88108 0.87124 0.87985 0.85719 0.86738 0.73163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.53 -13.07 9.11 -34.44 -0.31 -13.38 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.01 0.31 5.30 -27.88 -0.15 0.17 16 10 C 0.11 1.82 6.16 -4.04 -0.02 1.79 16 11 N -0.28 -5.02 3.35 -58.27 -0.19 -5.22 16 12 N -0.09 -1.81 13.29 60.35 0.80 -1.01 16 13 N -0.09 -1.88 13.43 60.35 0.81 -1.07 16 14 N -0.31 -5.65 12.36 32.70 0.40 -5.25 16 15 C 0.17 2.81 7.39 -155.43 -1.15 1.66 16 16 C -0.02 -0.26 4.85 -27.89 -0.14 -0.40 16 17 C -0.12 -1.52 5.79 -27.88 -0.16 -1.68 16 18 C 0.49 6.25 8.33 36.01 0.30 6.55 16 19 O -0.52 -7.64 16.74 -18.75 -0.31 -7.95 16 20 O -0.51 -5.62 13.42 -39.23 -0.53 -6.14 16 21 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 22 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 23 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 24 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 25 H 0.10 1.49 7.14 -51.93 -0.37 1.12 16 26 H 0.11 1.27 8.10 -51.93 -0.42 0.85 16 27 H 0.10 1.24 7.12 -51.93 -0.37 0.87 16 28 H 0.12 1.83 6.14 -51.93 -0.32 1.51 16 29 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.41 2.60 9.10 45.56 0.41 3.01 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -30.84 273.32 -3.11 -33.95 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.19 Total: 1.01 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.73 Total: -3.69 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 2.56 Total: -35.97 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.84 Total: -14.10 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.84 -3.11 -33.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213257063.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.383 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds