Wall clock time and date at job start Mon Mar 30 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48495 * 109.47097 * 240.00445 * 3 2 1 5 5 H 1.48493 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46730 * 120.00675 * 3 2 1 7 7 C 1.37878 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99894 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47187 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46904 * 179.97438 * 10 9 7 12 12 N 1.29019 * 126.43933 * 270.17387 * 11 10 9 13 13 N 1.28737 * 108.80722 * 180.25054 * 12 11 10 14 14 N 1.28838 * 109.39931 * 359.74514 * 13 12 11 15 15 C 1.31077 * 107.99224 * 0.02562 * 14 13 12 16 16 C 1.50696 * 126.66111 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47055 * 90.02224 * 16 15 14 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 15 19 19 O 1.20826 * 119.99541 * 0.02562 * 18 17 16 20 20 O 1.34221 * 120.00092 * 180.02562 * 18 17 16 21 21 H 0.96999 * 120.00159 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47298 * 60.00074 * 9 7 2 23 23 H 1.09009 * 109.46990 * 300.00275 * 9 7 2 24 24 H 1.08996 * 109.47407 * 59.99569 * 10 9 7 25 25 H 1.09005 * 109.46628 * 299.99354 * 10 9 7 26 26 H 1.09001 * 109.47328 * 330.02494 * 16 15 14 27 27 H 1.09004 * 109.47043 * 210.02305 * 16 15 14 28 28 H 1.09001 * 109.46832 * 59.99966 * 17 16 15 29 29 H 1.09000 * 109.47611 * 300.00263 * 17 16 15 30 30 H 0.96705 * 117.00192 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 0.0001 12 7 1.1271 -5.5925 1.0383 13 7 0.5191 -6.6584 0.6489 14 7 0.5005 -6.6942 -0.6388 15 6 1.1130 -5.6236 -1.0825 16 6 1.3321 -5.2450 -2.5246 17 6 0.1541 -4.4008 -3.0148 18 6 0.3735 -4.0215 -4.4568 19 8 1.3697 -4.3892 -5.0332 20 8 -0.5377 -3.2754 -5.1006 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8718 -3.6044 -0.8906 26 1 1.4086 -6.1482 -3.1298 27 1 2.2535 -4.6692 -2.6131 28 1 0.0776 -3.4975 -2.4095 29 1 -0.7673 -4.9764 -2.9263 30 1 -0.3534 -3.0578 -6.0247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213257063.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:39 Heat of formation + Delta-G solvation = -18.083263 kcal Electronic energy + Delta-G solvation = -16972.753577 eV Core-core repulsion = 13997.374732 eV Total energy + Delta-G solvation = -2975.378845 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.21254 -41.23109 -37.53467 -37.16179 -35.63335 -35.10390 -32.57777 -31.82771 -27.80768 -27.02747 -24.79677 -23.85932 -22.76874 -21.62960 -19.28264 -18.95958 -18.04462 -17.74480 -17.46629 -17.18122 -16.50761 -15.79102 -15.63014 -14.72089 -14.50438 -14.36548 -14.07067 -13.77648 -13.42033 -13.26764 -12.85699 -12.84490 -12.51785 -12.43434 -12.28376 -12.19349 -12.00857 -11.69012 -11.48396 -11.43591 -11.02096 -10.59717 -8.25504 -6.37815 0.22701 1.07941 1.13738 1.20053 1.45899 1.46933 1.54220 2.09550 2.40515 3.04444 3.11117 3.31779 3.62542 3.77964 4.10423 4.17562 4.27004 4.41541 4.47560 4.55782 4.68241 4.78306 4.79867 5.14379 5.39301 5.40589 5.62791 5.71879 6.03233 6.76282 7.01149 7.33232 7.54817 8.85882 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.008512 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.861203 B = 3288.822406 C = 4598.110435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.020 3.980 10 C 0.116 3.884 11 N -0.287 5.287 12 N -0.113 5.113 13 N -0.110 5.110 14 N -0.322 5.322 15 C 0.189 3.811 16 C -0.017 4.017 17 C -0.116 4.116 18 C 0.500 3.500 19 O -0.540 6.540 20 O -0.513 6.513 21 H 0.265 0.735 22 H 0.019 0.981 23 H -0.008 1.008 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -5.092 -9.104 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.097 0.903 9 C -0.018 4.018 10 C -0.003 4.003 11 N -0.089 5.089 12 N -0.099 5.099 13 N -0.103 5.103 14 N -0.173 5.173 15 C -0.089 4.089 16 C -0.057 4.057 17 C -0.155 4.155 18 C 0.344 3.656 19 O -0.431 6.431 20 O -0.327 6.327 21 H 0.074 0.926 22 H 0.037 0.963 23 H 0.011 0.989 24 H 0.131 0.869 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 2.501 -6.038 -7.810 10.184 hybrid contribution 0.430 1.786 -0.776 1.995 sum 2.931 -4.252 -8.586 10.020 Atomic orbital electron populations 1.70068 1.07819 1.28142 1.50494 1.25844 0.95564 1.03143 0.94348 0.85530 0.78230 0.78175 0.79348 1.18667 1.21603 1.19365 1.21325 0.94127 0.90467 1.51989 0.90291 1.19332 0.94177 0.91584 0.96717 1.22833 0.94799 0.75477 1.07187 1.49033 1.36525 1.19699 1.03597 1.78818 1.13772 1.02907 1.14402 1.78493 1.15292 1.12025 1.04506 1.74849 1.19541 1.19514 1.03408 1.26230 0.97748 0.89857 0.95020 1.20018 0.99670 1.03163 0.82898 1.21319 1.01513 1.02881 0.89750 1.22977 0.79543 0.73672 0.89407 1.90716 1.29785 1.53418 1.69160 1.84516 1.49608 1.65331 1.33273 0.92625 0.96286 0.98914 0.86920 0.84715 0.85202 0.86663 0.87713 0.85691 0.70772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.19 13.29 21.45 0.28 -50.91 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.96 39.72 29.54 68.60 2.03 41.74 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.54 -25.86 9.11 25.60 0.23 -25.63 16 8 H 0.08 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.02 0.89 5.30 29.85 0.16 1.04 16 10 C 0.12 3.82 6.16 86.38 0.53 4.36 16 11 N -0.29 -9.89 3.35 -338.26 -1.13 -11.02 16 12 N -0.11 -4.42 13.29 37.02 0.49 -3.93 16 13 N -0.11 -4.32 13.43 37.01 0.50 -3.82 16 14 N -0.32 -11.43 12.36 -50.45 -0.62 -12.05 16 15 C 0.19 5.87 7.39 138.13 1.02 6.89 16 16 C -0.02 -0.41 4.85 29.85 0.14 -0.26 16 17 C -0.12 -2.76 5.79 29.85 0.17 -2.59 16 18 C 0.50 11.72 8.33 71.24 0.59 12.32 16 19 O -0.54 -14.62 16.74 21.96 0.37 -14.25 16 20 O -0.51 -10.25 13.42 -51.33 -0.69 -10.94 16 21 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 22 H 0.02 0.86 6.14 -2.39 -0.01 0.85 16 23 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 24 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 25 H 0.14 3.55 7.14 -2.38 -0.02 3.53 16 26 H 0.13 2.61 8.10 -2.39 -0.02 2.59 16 27 H 0.12 2.44 7.12 -2.38 -0.02 2.42 16 28 H 0.10 3.00 6.14 -2.39 -0.01 2.98 16 29 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.43 4.48 9.10 -74.05 -0.67 3.81 16 Total: -1.00 -65.48 273.32 5.05 -60.43 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.51 Total: 7.63 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 3.32 Total: -2.87 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -0.48 Total: -81.74 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.32 Total: -25.19 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.74 kcal Total: -65.48 5.05 -60.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213257063.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.346 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds