Wall clock time and date at job start Mon Mar 30 2020 03:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00191 * 2 1 4 4 H 1.48507 * 109.46863 * 270.00281 * 3 2 1 5 5 H 1.48488 * 109.47092 * 30.00078 * 3 2 1 6 6 H 1.48500 * 109.47068 * 150.00535 * 3 2 1 7 7 C 1.37879 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00056 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.34767 * 120.00056 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00119 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00169 * 179.97438 * 11 10 9 14 14 N 1.46895 * 109.47030 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99789 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47109 * 179.97438 * 15 14 13 17 17 N 1.34500 * 126.28672 * 269.71272 * 16 15 14 18 18 C 1.31126 * 105.60992 * 179.90240 * 17 16 15 19 19 O 1.33638 * 106.90237 * 0.35684 * 18 17 16 20 20 N 1.21302 * 109.81213 * 359.76848 * 19 18 17 21 21 H 0.97008 * 119.99840 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47157 * 59.99624 * 9 7 2 23 23 H 1.09005 * 109.46416 * 299.99803 * 9 7 2 24 24 H 0.97000 * 119.99723 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.46908 * 59.99618 * 13 11 10 26 26 H 1.09002 * 109.46622 * 299.99792 * 13 11 10 27 27 H 1.00899 * 111.00672 * 56.04735 * 14 13 11 28 28 H 1.08992 * 109.47459 * 299.99826 * 15 14 13 29 29 H 1.09004 * 109.47040 * 59.99976 * 15 14 13 30 30 H 1.08011 * 126.54851 * 180.11937 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5612 -5.1049 -0.0011 13 6 2.7329 -6.0289 -0.0016 14 7 1.9983 -7.3010 -0.0015 15 6 2.9228 -8.4427 -0.0027 16 6 2.1347 -9.7272 -0.0019 17 7 1.7243 -10.4086 1.0827 18 6 1.0783 -11.4519 0.6203 19 8 1.1228 -11.3768 -0.7132 20 7 1.7317 -10.3829 -1.0490 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6246 -2.5570 0.8898 24 1 3.1566 -3.4355 -0.0009 25 1 3.3596 -5.9715 0.8883 26 1 3.3594 -5.9707 -0.8917 27 1 1.3615 -7.3510 -0.7826 28 1 3.5500 -8.4014 -0.8931 29 1 3.5515 -8.4020 0.8868 30 1 0.6045 -12.2263 1.2055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231808595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:55 Heat of formation + Delta-G solvation = 36.470809 kcal Electronic energy + Delta-G solvation = -15974.369791 eV Core-core repulsion = 13001.356588 eV Total energy + Delta-G solvation = -2973.013203 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.83689 -38.93619 -36.81258 -35.18673 -34.13163 -32.58751 -32.31076 -29.04213 -27.13127 -24.83455 -24.32931 -22.42601 -22.12729 -19.76429 -18.32941 -18.28405 -17.19921 -16.26151 -15.96554 -15.65813 -15.26486 -14.71863 -14.28084 -13.90960 -13.72705 -12.98104 -12.62125 -12.36577 -12.31863 -11.96037 -11.85947 -11.50110 -11.26450 -10.98743 -10.88269 -10.41839 -10.32284 -9.40456 -9.12165 -8.74343 -8.56991 -7.88783 -6.16977 -4.24117 0.95569 1.98302 2.78438 3.23888 3.29847 3.32307 3.34925 3.38846 3.80823 3.94574 4.31057 4.48088 4.76421 5.01010 5.19063 5.25510 5.34459 5.41746 5.48537 5.56337 5.75439 6.63908 7.14550 7.31120 7.42652 7.51587 7.66154 7.93424 7.96570 8.61323 8.77543 9.09246 9.42533 10.93238 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.081792 B = 0.003400 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.247594 B = 8233.463389 C = 8395.316235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.497 3.503 12 O -0.543 6.543 13 C 0.042 3.958 14 N -0.665 5.665 15 C 0.150 3.850 16 C 0.178 3.822 17 N -0.470 5.470 18 C 0.156 3.844 19 O 0.077 5.923 20 N -0.380 5.380 21 H 0.266 0.734 22 H 0.026 0.974 23 H 0.027 0.973 24 H 0.390 0.610 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.355 0.645 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -20.287 0.177 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.362 5.362 11 C 0.281 3.719 12 O -0.421 6.421 13 C -0.091 4.091 14 N -0.300 5.300 15 C 0.019 3.981 16 C -0.095 4.095 17 N -0.203 5.203 18 C -0.085 4.085 19 O 0.018 5.982 20 N -0.087 5.087 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.223 0.777 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.174 0.826 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 6.250 -19.742 0.354 20.711 hybrid contribution 0.975 0.795 -0.683 1.431 sum 7.225 -18.947 -0.329 20.281 Atomic orbital electron populations 1.69977 1.06126 1.27321 1.48830 1.24961 0.94920 0.99480 0.94696 0.86406 0.79622 0.82622 0.78200 1.20480 1.20990 1.19727 1.21225 0.93262 0.90446 1.53285 0.91878 1.19107 0.88294 0.81878 0.97769 1.46428 1.11147 1.06006 1.72623 1.20249 0.89445 0.84222 0.78025 1.90679 1.16662 1.84663 1.50069 1.21858 0.95785 0.88648 1.02788 1.60042 1.18389 0.99570 1.51949 1.20142 0.91961 0.82712 1.03288 1.25734 1.00649 0.99961 0.83194 1.71899 1.13528 1.05064 1.29811 1.30537 0.97204 0.98624 0.82145 1.85302 1.53361 1.33950 1.25635 1.74668 1.11855 0.98014 1.24124 0.92426 0.95577 0.95468 0.77711 0.87983 0.92284 0.82553 0.92178 0.87561 0.72151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.67 5.43 -5.19 -0.03 6.64 16 10 N -0.71 -14.85 5.55 -61.47 -0.34 -15.20 16 11 C 0.50 9.87 7.87 -10.99 -0.09 9.79 16 12 O -0.54 -13.31 16.20 5.56 0.09 -13.22 16 13 C 0.04 0.57 6.17 -4.98 -0.03 0.54 16 14 N -0.67 -9.53 6.12 -116.34 -0.71 -10.24 16 15 C 0.15 1.67 6.31 -4.97 -0.03 1.64 16 16 C 0.18 2.18 7.73 -156.37 -1.21 0.97 16 17 N -0.47 -5.39 11.55 -13.72 -0.16 -5.55 16 18 C 0.16 1.14 13.40 51.98 0.70 1.84 16 19 O 0.08 0.74 11.31 18.11 0.20 0.95 16 20 N -0.38 -4.64 12.16 30.87 0.38 -4.27 16 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 25 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.35 5.50 8.42 -39.29 -0.33 5.17 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.26 0.30 8.06 -52.48 -0.42 -0.13 16 LS Contribution 278.23 15.07 4.19 4.19 Total: -1.00 -35.59 278.23 -4.90 -40.49 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.16 Total: 4.52 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.11 Total: 7.99 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.10 Total: -60.74 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.29 Total: -12.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -35.59 -4.90 -40.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231808595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.963 kcal (2) G-P(sol) polarization free energy of solvation -35.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds