Wall clock time and date at job start Mon Mar 30 2020 03:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00191 * 2 1 4 4 H 1.48507 * 109.46863 * 270.00281 * 3 2 1 5 5 H 1.48488 * 109.47092 * 30.00078 * 3 2 1 6 6 H 1.48500 * 109.47068 * 150.00535 * 3 2 1 7 7 C 1.37879 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00056 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.34767 * 120.00056 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00119 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00169 * 179.97438 * 11 10 9 14 14 N 1.46895 * 109.47030 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99789 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47109 * 179.97438 * 15 14 13 17 17 N 1.34500 * 126.28672 * 269.71272 * 16 15 14 18 18 C 1.31126 * 105.60992 * 179.90240 * 17 16 15 19 19 O 1.33638 * 106.90237 * 0.35684 * 18 17 16 20 20 N 1.21302 * 109.81213 * 359.76848 * 19 18 17 21 21 H 0.97008 * 119.99840 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47157 * 59.99624 * 9 7 2 23 23 H 1.09005 * 109.46416 * 299.99803 * 9 7 2 24 24 H 0.97000 * 119.99723 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.46908 * 59.99618 * 13 11 10 26 26 H 1.09002 * 109.46622 * 299.99792 * 13 11 10 27 27 H 1.00899 * 111.00672 * 56.04735 * 14 13 11 28 28 H 1.08992 * 109.47459 * 299.99826 * 15 14 13 29 29 H 1.09004 * 109.47040 * 59.99976 * 15 14 13 30 30 H 1.08011 * 126.54851 * 180.11937 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8833 -0.0011 12 8 0.5612 -5.1049 -0.0011 13 6 2.7329 -6.0289 -0.0016 14 7 1.9983 -7.3010 -0.0015 15 6 2.9228 -8.4427 -0.0027 16 6 2.1347 -9.7272 -0.0019 17 7 1.7243 -10.4086 1.0827 18 6 1.0783 -11.4519 0.6203 19 8 1.1228 -11.3768 -0.7132 20 7 1.7317 -10.3829 -1.0490 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6246 -2.5570 0.8898 24 1 3.1566 -3.4355 -0.0009 25 1 3.3596 -5.9715 0.8883 26 1 3.3594 -5.9707 -0.8917 27 1 1.3615 -7.3510 -0.7826 28 1 3.5500 -8.4014 -0.8931 29 1 3.5515 -8.4020 0.8868 30 1 0.6045 -12.2263 1.2055 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231808595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:54 Heat of formation + Delta-G solvation = 4.193032 kcal Electronic energy + Delta-G solvation = -15975.769461 eV Core-core repulsion = 13001.356588 eV Total energy + Delta-G solvation = -2974.412873 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.60550 -40.56163 -37.76660 -36.28988 -35.90949 -34.35489 -33.38576 -30.41843 -28.79347 -26.13132 -25.08809 -24.21534 -23.01369 -21.44555 -19.36725 -19.07774 -18.68332 -17.62843 -17.26379 -17.03575 -16.62947 -16.27613 -15.66431 -15.36951 -14.92590 -14.30463 -14.03082 -13.98196 -13.68553 -13.20348 -12.99510 -12.91591 -12.70433 -12.66970 -12.22671 -12.04812 -11.49105 -11.19667 -10.80978 -10.79834 -9.85471 -9.58441 -8.29352 -6.46205 0.27094 1.20836 1.43420 1.45941 1.57270 1.76203 2.20096 2.29029 2.46841 2.80798 3.05649 3.14541 3.30814 3.92564 4.05454 4.26967 4.36864 4.43420 4.58572 4.81676 5.06874 5.10163 5.23418 5.48077 5.61794 5.75492 5.84501 6.02081 6.65221 6.92095 7.22081 7.23435 7.50591 8.82983 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.081792 B = 0.003400 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.247594 B = 8233.463389 C = 8395.316235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.706 5.706 11 C 0.492 3.508 12 O -0.596 6.596 13 C 0.059 3.941 14 N -0.687 5.687 15 C 0.153 3.847 16 C 0.160 3.840 17 N -0.511 5.511 18 C 0.182 3.818 19 O 0.076 5.924 20 N -0.404 5.404 21 H 0.269 0.731 22 H -0.014 1.014 23 H -0.015 1.015 24 H 0.411 0.589 25 H 0.133 0.867 26 H 0.096 0.904 27 H 0.343 0.657 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -20.941 0.485 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.357 5.357 11 C 0.279 3.721 12 O -0.477 6.477 13 C -0.072 4.072 14 N -0.320 5.320 15 C 0.023 3.977 16 C -0.113 4.113 17 N -0.243 5.243 18 C -0.058 4.058 19 O 0.016 5.984 20 N -0.113 5.113 21 H 0.077 0.923 22 H 0.004 0.996 23 H 0.003 0.997 24 H 0.247 0.753 25 H 0.151 0.849 26 H 0.114 0.886 27 H 0.162 0.838 28 H 0.097 0.903 29 H 0.139 0.861 30 H 0.332 0.668 Dipole moment (debyes) X Y Z Total from point charges 8.699 -20.434 0.672 22.218 hybrid contribution 0.149 0.847 -0.752 1.142 sum 8.848 -19.586 -0.080 21.492 Atomic orbital electron populations 1.70147 1.08360 1.28569 1.50026 1.26102 0.95777 1.04031 0.93868 0.85134 0.78515 0.76843 0.78583 1.19610 1.21072 1.17742 1.21636 0.94397 0.90491 1.52809 0.89572 1.18529 0.88758 0.84449 0.93964 1.46139 1.11282 1.05363 1.72909 1.21403 0.89882 0.85054 0.75790 1.90654 1.19581 1.85434 1.52057 1.21790 0.93923 0.85635 1.05882 1.60018 1.19537 1.00657 1.51806 1.20221 0.91439 0.81217 1.04825 1.25973 1.01203 1.00550 0.83545 1.71887 1.15461 1.06733 1.30261 1.31688 0.94690 0.98081 0.81292 1.85258 1.53061 1.33239 1.26805 1.74655 1.12827 0.98926 1.24879 0.92270 0.99599 0.99681 0.75343 0.84940 0.88622 0.83840 0.90291 0.86142 0.66775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.99 42.28 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.56 -30.20 9.28 25.60 0.24 -29.97 16 8 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 14.73 5.43 85.63 0.46 15.19 16 10 N -0.71 -29.41 5.55 -466.78 -2.59 -32.00 16 11 C 0.49 19.55 7.87 87.66 0.69 20.24 16 12 O -0.60 -30.36 16.20 -3.04 -0.05 -30.41 16 13 C 0.06 1.49 6.17 85.56 0.53 2.02 16 14 N -0.69 -18.91 6.12 -521.98 -3.19 -22.10 16 15 C 0.15 3.14 6.31 85.56 0.54 3.68 16 16 C 0.16 3.76 7.73 138.46 1.07 4.83 16 17 N -0.51 -10.97 11.55 -315.39 -3.64 -14.61 16 18 C 0.18 2.24 13.40 130.52 1.75 3.99 16 19 O 0.08 1.35 11.31 74.88 0.85 2.19 16 20 N -0.40 -9.57 12.16 -60.40 -0.73 -10.30 16 21 H 0.27 15.25 8.31 -92.70 -0.77 14.47 16 22 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 23 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 24 H 0.41 13.63 8.32 -92.71 -0.77 12.86 16 25 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.34 10.67 8.42 -89.69 -0.76 9.91 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.32 -0.55 8.06 -2.91 -0.02 -0.57 16 Total: -1.00 -81.81 278.23 -1.65 -83.46 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -0.34 Total: 15.41 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 5.74 Total: 20.53 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -9.87 Total: -135.49 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: 0.80 Total: -28.22 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -81.81 -1.65 -83.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231808595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.652 kcal (2) G-P(sol) polarization free energy of solvation -81.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds