Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31086 * 1 3 3 Si 1.86803 * 120.00413 * 2 1 4 4 H 1.48497 * 109.47029 * 240.00025 * 3 2 1 5 5 H 1.48506 * 109.46661 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47547 * 119.99706 * 3 2 1 7 7 C 1.39653 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.41441 * 119.99647 * 0.02562 * 7 2 1 10 10 C 1.41881 * 126.59436 * 359.97438 * 9 7 2 11 11 N 1.30287 * 108.10543 * 179.97438 * 10 9 7 12 12 N 1.39868 * 109.34488 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.67885 * 179.97438 * 12 11 10 14 14 C 1.53175 * 109.54071 * 300.02122 * 13 12 11 15 15 C 1.53092 * 109.16344 * 176.84833 * 14 13 12 16 16 O 1.42905 * 109.41215 * 302.38824 * 15 14 13 17 17 C 1.42905 * 114.09831 * 61.16158 * 16 15 14 18 18 C 1.53098 * 109.41155 * 298.83847 * 17 16 15 19 19 C 1.34658 * 108.64599 * 0.23885 * 12 11 10 20 20 F 1.35092 * 126.45301 * 179.73868 * 19 12 11 21 21 H 0.96997 * 119.99780 * 0.02562 * 1 2 3 22 22 H 1.08001 * 125.94868 * 0.02562 * 10 9 7 23 23 H 1.08996 * 109.54248 * 179.84458 * 13 12 11 24 24 H 1.09004 * 109.52714 * 56.93853 * 14 13 12 25 25 H 1.09001 * 109.57654 * 296.78583 * 14 13 12 26 26 H 1.08997 * 109.48111 * 182.40965 * 15 14 13 27 27 H 1.09000 * 109.48212 * 62.37239 * 15 14 13 28 28 H 1.09000 * 109.47932 * 58.81878 * 17 16 15 29 29 H 1.08993 * 109.48024 * 178.86013 * 17 16 15 30 30 H 1.08996 * 109.52270 * 297.70307 * 18 17 16 31 31 H 1.08995 * 109.57012 * 177.54155 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6177 0.0000 4 1 3.0987 1.6963 -1.2125 5 1 1.2799 2.7464 -0.0006 6 1 3.0987 1.6964 1.2125 7 6 2.0091 -1.2094 0.0005 8 1 3.0891 -1.2095 0.0001 9 6 1.3018 -2.4343 0.0005 10 6 -0.1076 -2.5971 0.0005 11 7 -0.3677 -3.8738 0.0000 12 7 0.8330 -4.5912 0.0002 13 6 0.9561 -6.0510 0.0003 14 6 0.2792 -6.6222 1.2500 15 6 0.3438 -8.1510 1.2022 16 8 -0.2837 -8.6157 0.0053 17 6 0.3357 -8.1519 -1.1961 18 6 0.2708 -6.6231 -1.2446 19 6 1.8570 -3.7168 0.0062 20 9 3.1730 -4.0219 0.0133 21 1 -0.4850 0.8400 -0.0004 22 1 -0.8378 -1.8014 0.0001 23 1 2.0102 -6.3281 -0.0024 24 1 -0.7624 -6.3023 1.2787 25 1 0.7949 -6.2636 2.1408 26 1 -0.1740 -8.5639 2.0679 27 1 1.3855 -8.4715 1.2145 28 1 1.3773 -8.4723 -1.2151 29 1 -0.1879 -8.5654 -2.0580 30 1 -0.7709 -6.3032 -1.2664 31 1 0.7809 -6.2642 -2.1385 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260097186.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = -43.131432 kcal Electronic energy + Delta-G solvation = -17252.638798 eV Core-core repulsion = 14256.253821 eV Total energy + Delta-G solvation = -2996.384977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.43281 -41.43796 -40.00062 -36.06531 -34.88389 -32.18300 -31.21752 -30.85853 -27.06388 -25.35475 -24.61543 -22.53332 -21.64547 -20.77800 -19.29998 -18.07718 -17.18092 -17.10297 -16.74286 -16.68897 -15.85466 -15.69036 -15.19290 -15.17321 -14.95599 -14.39123 -14.05843 -13.43854 -13.37467 -12.97966 -12.92031 -12.77541 -12.55997 -12.37896 -11.98396 -11.91398 -11.44781 -11.21106 -10.95477 -10.69454 -9.77577 -9.34472 -8.50738 -6.16691 0.98995 1.44071 1.49682 1.55485 1.70870 2.21694 2.29028 2.88962 3.34689 3.42551 3.66739 3.82179 3.86156 3.90112 4.21150 4.22729 4.44511 4.50601 4.67713 4.72310 4.76475 4.92793 4.98883 5.04365 5.07430 5.28480 5.51695 5.90366 6.16662 6.41353 6.54041 6.82973 6.98592 7.22825 8.49730 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.053028 B = 0.005954 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.894255 B = 4701.407444 C = 4900.995138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.031 3.969 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.471 4.471 8 H 0.065 0.935 9 C -0.048 4.048 10 C 0.022 3.978 11 N -0.304 5.304 12 N -0.387 5.387 13 C 0.158 3.842 14 C -0.155 4.155 15 C 0.071 3.929 16 O -0.395 6.395 17 C 0.071 3.929 18 C -0.155 4.155 19 C 0.036 3.964 20 F -0.127 7.127 21 H 0.288 0.712 22 H 0.205 0.795 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -10.718 -0.005 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.179 4.179 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.505 4.505 8 H 0.083 0.917 9 C -0.059 4.059 10 C -0.164 4.164 11 N -0.127 5.127 12 N -0.181 5.181 13 C 0.056 3.944 14 C -0.194 4.194 15 C -0.006 4.006 16 O -0.313 6.313 17 C -0.006 4.006 18 C -0.194 4.194 19 C -0.102 4.102 20 F -0.107 7.107 21 H 0.099 0.901 22 H 0.221 0.779 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.137 0.863 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.084 0.916 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.112 -11.671 -0.008 11.671 hybrid contribution 1.545 1.699 0.004 2.296 sum 1.433 -9.972 -0.004 10.074 Atomic orbital electron populations 1.69478 1.08316 1.30042 1.40538 1.26540 0.95782 1.03880 0.91729 0.85073 0.78366 0.75562 0.79532 1.18978 1.18857 1.18967 1.18915 0.93893 0.90087 1.47569 0.91662 1.18188 0.93156 0.90689 1.03848 1.24811 0.96763 0.92619 1.02190 1.76593 1.03913 1.06301 1.25930 1.48155 1.01916 1.05193 1.62855 1.21357 1.00824 0.74674 0.97514 1.22519 1.01717 0.98351 0.96831 1.22675 0.99337 0.90254 0.88298 1.87912 1.57150 1.71863 1.14422 1.22675 0.99457 0.90261 0.88170 1.22511 1.01676 0.98330 0.96851 1.17869 0.75058 0.90609 1.26673 1.91312 1.29652 1.93650 1.96100 0.90139 0.77914 0.88609 0.91661 0.91014 0.86350 0.90949 0.90948 0.86340 0.91645 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.18 10.32 21.79 0.22 -43.95 16 2 C 0.03 1.58 5.49 85.15 0.47 2.05 16 3 Si 0.99 39.38 29.56 68.60 2.03 41.40 16 4 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.47 -26.58 9.39 23.40 0.22 -26.36 16 8 H 0.07 3.63 7.84 -2.91 -0.02 3.61 16 9 C -0.05 -2.71 5.94 -21.22 -0.13 -2.84 16 10 C 0.02 1.21 10.91 85.82 0.94 2.15 16 11 N -0.30 -15.25 12.29 -55.95 -0.69 -15.94 16 12 N -0.39 -17.99 3.27 -324.95 -1.06 -19.06 16 13 C 0.16 5.52 3.03 45.11 0.14 5.66 16 14 C -0.16 -4.70 5.67 30.68 0.17 -4.52 16 15 C 0.07 1.57 6.84 72.01 0.49 2.07 16 16 O -0.39 -9.81 10.77 -148.98 -1.60 -11.41 16 17 C 0.07 1.57 6.84 72.01 0.49 2.07 16 18 C -0.15 -4.68 5.67 30.69 0.17 -4.51 16 19 C 0.04 1.88 8.75 84.63 0.74 2.62 16 20 F -0.13 -6.28 17.10 44.97 0.77 -5.51 16 21 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 22 H 0.20 11.11 5.77 -2.91 -0.02 11.10 16 23 H 0.10 3.12 7.87 -2.39 -0.02 3.10 16 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -62.78 268.08 4.51 -58.26 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.14 Total: 17.83 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.71 Total: -21.62 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.52 Total: -78.95 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.60 Total: -11.41 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.77 Total: -5.51 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Total: -62.78 4.51 -58.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097186.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.133 kcal (2) G-P(sol) polarization free energy of solvation -62.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds