Wall clock time and date at job start Mon Mar 30 2020 04:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86804 * 119.99698 * 2 1 4 4 H 1.48507 * 109.47048 * 84.85670 * 3 2 1 5 5 H 1.48498 * 109.46815 * 204.85656 * 3 2 1 6 6 H 1.48502 * 109.46947 * 324.85750 * 3 2 1 7 7 C 1.38882 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00235 * 13.80673 * 7 2 1 9 9 N 1.37196 * 119.99917 * 193.80887 * 7 2 1 10 10 C 1.46052 * 118.48682 * 227.94423 * 9 7 2 11 11 C 1.53354 * 109.81224 * 160.25813 * 10 9 7 12 12 C 1.53298 * 108.24990 * 48.15527 * 11 10 9 13 13 C 1.52925 * 109.56963 * 178.64245 * 12 11 10 14 14 C 1.53147 * 109.21292 * 182.44875 * 13 12 11 15 15 C 1.53048 * 109.25464 * 57.40615 * 14 13 12 16 16 N 1.46847 * 109.52933 * 300.69042 * 15 14 13 17 17 C 1.46872 * 111.17844 * 61.86736 * 16 15 14 18 18 O 1.45225 * 108.45701 * 298.44114 * 12 11 10 19 19 C 1.33726 * 118.48982 * 48.21309 * 9 7 2 20 20 O 1.21513 * 118.47989 * 2.39563 * 19 9 7 21 21 H 0.97005 * 120.00457 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.39748 * 280.56710 * 10 9 7 23 23 H 1.09000 * 109.39723 * 40.29332 * 10 9 7 24 24 H 1.08994 * 109.90185 * 288.38707 * 11 10 9 25 25 H 1.09002 * 109.60075 * 167.74623 * 11 10 9 26 26 H 1.09004 * 109.50924 * 302.37213 * 13 12 11 27 27 H 1.09001 * 109.50954 * 62.52737 * 13 12 11 28 28 H 1.08990 * 109.50969 * 297.47397 * 14 13 12 29 29 H 1.08997 * 109.50112 * 177.33959 * 14 13 12 30 30 H 1.09002 * 109.46042 * 180.67155 * 15 14 13 31 31 H 1.09007 * 109.45325 * 60.70427 * 15 14 13 32 32 H 1.00898 * 110.99591 * 297.78681 * 16 15 14 33 33 H 1.08992 * 109.45270 * 178.48159 * 17 16 15 34 34 H 1.09008 * 109.43315 * 58.53815 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.3873 2.1093 1.3945 5 1 3.5962 1.4113 -0.5885 6 1 1.5045 2.6189 -0.8059 7 6 2.0091 -1.2027 0.0005 8 1 1.4926 -2.1247 -0.2223 9 7 3.3513 -1.2197 0.2841 10 6 4.2407 -1.9687 -0.5997 11 6 5.6829 -1.4783 -0.4230 12 6 5.9898 -1.4206 1.0779 13 6 7.4348 -0.9665 1.2881 14 6 7.7514 -0.9705 2.7865 15 6 7.5079 -2.3724 3.3501 16 7 6.1073 -2.7540 3.1289 17 6 5.7911 -2.8046 1.6955 18 8 5.0817 -0.4711 1.6966 19 6 3.7844 -0.5542 1.3602 20 8 2.9660 0.0008 2.0664 21 1 -0.4851 0.8400 -0.0004 22 1 4.1830 -3.0297 -0.3568 23 1 3.9332 -1.8184 -1.6346 24 1 5.7932 -0.4854 -0.8586 25 1 6.3674 -2.1721 -0.9111 26 1 8.1097 -1.6490 0.7715 27 1 7.5611 0.0411 0.8919 28 1 7.1057 -0.2559 3.2969 29 1 8.7944 -0.6930 2.9388 30 1 7.7209 -2.3761 4.4191 31 1 8.1622 -3.0846 2.8471 32 1 5.4814 -2.1298 3.6154 33 1 4.7551 -3.1159 1.5630 34 1 6.4508 -3.5196 1.2036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260660214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:13 Heat of formation + Delta-G solvation = -63.311195 kcal Electronic energy + Delta-G solvation = -18846.660717 eV Core-core repulsion = 15972.860984 eV Total energy + Delta-G solvation = -2873.799732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81414 -38.23206 -35.61990 -35.25699 -32.38718 -31.88354 -31.13751 -28.22365 -24.70714 -24.02193 -23.66825 -22.16221 -20.85904 -18.68687 -17.75490 -16.70093 -16.22044 -15.61885 -15.21971 -14.83491 -14.54049 -14.20776 -14.02259 -13.43733 -13.11179 -12.73161 -12.64699 -12.41073 -12.22329 -11.57746 -11.49871 -11.34062 -11.19633 -11.00197 -10.79954 -10.63883 -10.35466 -9.95935 -9.74064 -9.00521 -8.61022 -8.24839 -7.70412 -6.21893 -4.08559 3.28996 3.42042 3.44833 3.62089 4.02283 4.33867 4.39031 4.55412 4.64777 4.73629 4.82748 5.00222 5.12983 5.19898 5.30663 5.40522 5.49683 5.56496 5.68560 5.72433 5.83221 5.86092 5.95820 6.04898 6.23334 6.23692 6.31488 6.95527 7.09944 7.42576 7.79176 8.20940 8.81506 8.93683 9.39666 9.71396 10.84315 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.009296 C = 0.009065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.084842 B = 3011.425795 C = 3088.118572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.094 3.906 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.302 1.302 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.476 5.476 10 C 0.106 3.894 11 C -0.162 4.162 12 C 0.080 3.920 13 C -0.104 4.104 14 C -0.158 4.158 15 C 0.056 3.944 16 N -0.680 5.680 17 C 0.042 3.958 18 O -0.352 6.352 19 C 0.598 3.402 20 O -0.530 6.530 21 H 0.273 0.727 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.351 0.649 33 H 0.088 0.912 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.556 -4.474 0.032 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.115 4.115 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.230 1.230 7 C -0.472 4.472 8 H 0.115 0.885 9 N -0.212 5.212 10 C -0.018 4.018 11 C -0.201 4.201 12 C 0.040 3.960 13 C -0.141 4.141 14 C -0.197 4.197 15 C -0.074 4.074 16 N -0.309 5.309 17 C -0.088 4.088 18 O -0.266 6.266 19 C 0.354 3.646 20 O -0.418 6.418 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.107 0.893 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.258 -4.666 0.630 16.926 hybrid contribution 0.359 1.770 -0.547 1.887 sum 16.618 -2.897 0.083 16.868 Atomic orbital electron populations 1.69728 1.06531 1.28127 1.45818 1.25342 0.94981 0.99283 0.91853 0.86377 0.78881 0.82612 0.78462 1.18512 1.20724 1.23031 1.18635 0.80381 0.95514 1.52686 0.88480 1.42974 1.08325 1.48963 1.20983 1.21643 0.87639 0.96026 0.96480 1.22563 0.98505 1.03585 0.95448 1.22826 0.89818 0.90510 0.92821 1.21549 0.92726 1.02449 0.97386 1.22245 1.01915 0.99537 0.96000 1.22049 0.90292 0.94185 1.00880 1.60712 1.04308 1.56218 1.09620 1.22567 1.03355 0.94021 0.88863 1.86613 1.18240 1.55295 1.66433 1.18251 0.80357 0.84026 0.82012 1.90840 1.47342 1.50749 1.52893 0.91727 0.92272 0.90138 0.90397 0.89211 0.90113 0.91000 0.90902 0.91440 0.90727 0.91141 0.83006 0.89338 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.76 13.96 55.49 0.77 -25.98 16 2 C 0.09 2.83 4.88 -17.47 -0.09 2.75 16 3 Si 0.91 24.91 24.74 -169.99 -4.21 20.70 16 4 H -0.26 -7.60 6.58 56.52 0.37 -7.22 16 5 H -0.28 -7.47 7.10 56.52 0.40 -7.06 16 6 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 7 C -0.35 -9.89 9.44 -14.91 -0.14 -10.03 16 8 H 0.10 2.86 8.06 -52.49 -0.42 2.44 16 9 N -0.48 -11.66 2.38 -120.78 -0.29 -11.94 16 10 C 0.11 1.91 5.68 -4.10 -0.02 1.89 16 11 C -0.16 -2.40 5.14 -26.39 -0.14 -2.53 16 12 C 0.08 1.25 0.71 -90.58 -0.06 1.18 16 13 C -0.10 -1.27 5.03 -26.69 -0.13 -1.41 16 14 C -0.16 -1.84 5.94 -26.63 -0.16 -2.00 16 15 C 0.06 0.63 6.55 -3.83 -0.03 0.61 16 16 N -0.68 -9.73 6.87 -113.90 -0.78 -10.51 16 17 C 0.04 0.61 4.95 -3.92 -0.02 0.59 16 18 O -0.35 -7.54 8.99 -39.46 -0.35 -7.90 16 19 C 0.60 15.33 5.82 53.59 0.31 15.64 16 20 O -0.53 -15.96 13.04 -19.40 -0.25 -16.21 16 21 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 22 H 0.06 0.96 7.05 -51.93 -0.37 0.59 16 23 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.35 5.71 8.44 -39.29 -0.33 5.38 16 33 H 0.09 1.50 6.29 -51.93 -0.33 1.17 16 34 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -34.20 264.14 -6.42 -40.62 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.82 Total: 0.55 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -0.47 Total: 6.69 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.30 Total: -48.44 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.61 Total: -24.11 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.21 Total: 20.70 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.20 -6.42 -40.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260660214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.686 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds