Wall clock time and date at job start Mon Mar 30 2020 03:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35545 * 116.99762 * 2 1 4 4 N 1.32283 * 120.45650 * 0.02562 * 3 2 1 5 5 C 1.33500 * 120.62481 * 179.97438 * 4 3 2 6 6 C 1.41428 * 119.21792 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99793 * 179.97438 * 6 5 4 8 8 C 1.40057 * 120.00050 * 0.02562 * 6 5 4 9 9 N 1.30709 * 119.99711 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00169 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47264 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47263 * 119.99295 * 10 8 6 13 13 H 1.48503 * 109.47243 * 239.99757 * 10 8 6 14 14 N 1.33467 * 121.56552 * 359.74980 * 5 4 3 15 15 C 1.31978 * 120.86039 * 0.51956 * 14 5 4 16 16 C 1.50703 * 120.35158 * 179.76740 * 15 14 5 17 17 C 1.53002 * 109.46966 * 59.71939 * 16 15 14 18 18 C 1.53000 * 109.46912 * 299.72027 * 16 15 14 19 19 C 1.39045 * 119.29421 * 359.48976 * 15 14 5 20 20 F 1.35095 * 120.71871 * 180.27799 * 19 15 14 21 21 H 1.08996 * 109.47413 * 299.99751 * 1 2 3 22 22 H 1.08998 * 109.47290 * 60.00273 * 1 2 3 23 23 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99589 * 180.02562 * 9 8 6 25 25 H 1.09002 * 109.47152 * 179.71799 * 16 15 14 26 26 H 1.09002 * 109.47075 * 299.99352 * 17 16 15 27 27 H 1.08996 * 109.47407 * 60.00310 * 17 16 15 28 28 H 1.09000 * 109.46986 * 180.02562 * 17 16 15 29 29 H 1.09004 * 109.46724 * 180.02562 * 18 16 15 30 30 H 1.09001 * 109.47194 * 299.99742 * 18 16 15 31 31 H 1.08992 * 109.47399 * 59.99914 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 7 1.3327 2.3228 0.0005 5 6 1.9352 3.5141 0.0010 6 6 1.1453 4.6873 0.0010 7 1 1.6196 5.6576 0.0018 8 6 -0.2519 4.5907 0.0010 9 7 -0.8258 3.4164 0.0005 10 14 -1.2952 6.1402 0.0017 11 1 -0.4104 7.3328 0.0028 12 1 -2.1523 6.1604 -1.2109 13 1 -2.1524 6.1593 1.2142 14 7 3.2653 3.6243 0.0060 15 6 4.0336 2.5512 0.0004 16 6 5.5343 2.6890 0.0008 17 6 5.9758 3.4535 1.2504 18 6 5.9765 3.4542 -1.2481 19 6 3.4436 1.2921 -0.0001 20 9 4.2024 0.1744 -0.0002 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -1.7935 3.3495 0.0001 25 1 5.9901 1.6989 0.0007 26 1 5.5201 4.4437 1.2505 27 1 5.6608 2.9084 2.1401 28 1 7.0612 3.5536 1.2505 29 1 7.0620 3.5535 -1.2480 30 1 5.6619 2.9096 -2.1383 31 1 5.5207 4.4443 -1.2480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261097405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:10 Heat of formation + Delta-G solvation = -54.235162 kcal Electronic energy + Delta-G solvation = -17469.369986 eV Core-core repulsion = 14472.503515 eV Total energy + Delta-G solvation = -2996.866471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.39744 -39.36706 -37.43098 -35.16343 -33.48559 -30.81590 -29.69832 -26.96992 -26.64377 -25.89717 -23.08679 -21.88971 -20.02034 -17.67660 -17.32519 -16.29301 -15.86726 -15.28376 -15.07330 -14.38218 -14.02060 -13.75460 -13.47524 -13.07819 -12.89348 -12.22120 -12.00950 -11.65673 -11.62381 -11.35971 -11.17303 -10.90099 -10.79103 -10.76741 -10.47449 -10.41722 -10.30115 -9.57835 -9.47741 -8.55111 -7.59861 -7.59060 -6.74339 -4.88146 2.36766 2.68824 2.97705 2.99528 3.03537 3.76631 3.98574 4.44673 5.17167 5.39685 5.52112 5.71221 5.76492 5.81815 5.90979 5.99755 6.07932 6.18517 6.19705 6.36029 6.37979 6.45772 6.53410 6.64966 6.74615 6.89708 6.93565 7.44610 7.87728 8.14384 8.35108 8.42698 8.87855 9.91052 10.06245 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.009867 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.485939 B = 2837.131970 C = 3937.552169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.319 6.319 3 C 0.346 3.654 4 N -0.539 5.539 5 C 0.409 3.591 6 C -0.386 4.386 7 H 0.099 0.901 8 C 0.065 3.935 9 N -0.709 5.709 10 Si 0.922 3.078 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.271 1.271 14 N -0.578 5.578 15 C 0.201 3.799 16 C -0.041 4.041 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.179 4.179 20 F -0.156 7.156 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.276 0.724 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -0.299 -0.013 2.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.225 6.225 3 C 0.151 3.849 4 N -0.273 5.273 5 C 0.174 3.826 6 C -0.421 4.421 7 H 0.117 0.883 8 C -0.162 4.162 9 N -0.330 5.330 10 Si 0.745 3.255 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.196 1.196 14 N -0.300 5.300 15 C 0.047 3.953 16 C -0.060 4.060 17 C -0.191 4.191 18 C -0.191 4.191 19 C -0.209 4.209 20 F -0.135 7.135 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.009 0.145 -0.005 2.015 hybrid contribution -0.327 -0.455 -0.003 0.560 sum 1.682 -0.310 -0.008 1.710 Atomic orbital electron populations 1.22635 0.77969 1.00410 1.03326 1.86125 1.22501 1.25736 1.88114 1.20391 0.87419 0.86868 0.90214 1.69125 1.36285 0.96605 1.25240 1.19595 0.84969 0.89947 0.88114 1.19416 0.89840 0.92381 1.40466 0.88316 1.26143 0.98772 0.97929 0.93378 1.70111 1.11212 1.24540 1.27179 0.86029 0.79529 0.81265 0.78682 1.17987 1.19625 1.19631 1.68467 1.06339 1.30085 1.25118 1.21023 0.95854 0.86764 0.91637 1.19914 0.89518 1.00013 0.96572 1.21696 0.99768 1.01185 0.96407 1.21696 0.99774 1.01175 0.96416 1.17926 0.86564 0.83846 1.32543 1.91257 1.75346 1.50471 1.96450 0.92256 0.92262 0.90652 0.91267 0.90385 0.91418 0.93237 0.93011 0.93002 0.93241 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 10.41 101.05 1.05 2.09 16 2 O -0.32 -7.59 10.41 -18.33 -0.19 -7.78 16 3 C 0.35 9.01 7.55 -16.63 -0.13 8.88 16 4 N -0.54 -14.63 6.80 -12.65 -0.09 -14.72 16 5 C 0.41 11.14 7.36 -158.32 -1.17 9.97 16 6 C -0.39 -9.98 9.37 -37.69 -0.35 -10.34 16 7 H 0.10 2.44 7.85 -52.49 -0.41 2.03 16 8 C 0.07 1.55 5.50 -17.35 -0.10 1.45 16 9 N -0.71 -17.33 11.42 55.55 0.63 -16.70 16 10 Si 0.92 17.49 29.56 -169.99 -5.02 12.47 16 11 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 12 H -0.27 -5.07 7.11 56.52 0.40 -4.66 16 13 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 14 N -0.58 -14.73 9.91 -8.90 -0.09 -14.81 16 15 C 0.20 4.73 5.49 -82.23 -0.45 4.28 16 16 C -0.04 -0.76 3.18 -91.77 -0.29 -1.06 16 17 C -0.13 -2.20 9.10 37.16 0.34 -1.86 16 18 C -0.13 -2.20 9.10 37.16 0.34 -1.86 16 19 C -0.18 -4.48 7.37 -38.55 -0.28 -4.77 16 20 F -0.16 -3.70 16.22 2.25 0.04 -3.66 16 21 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 22 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 23 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 25 H 0.08 1.41 7.22 -51.93 -0.37 1.03 16 26 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -28.65 276.47 -5.31 -33.96 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -3.71 Total: 0.29 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.04 Total: 6.79 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.46 Total: -46.23 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.19 Total: -7.78 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.02 Total: 12.47 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.65 -5.31 -33.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.276 kcal (2) G-P(sol) polarization free energy of solvation -28.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds