Wall clock time and date at job start Mon Mar 30 2020 03:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.53007 * 109.47012 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47124 * 180.02562 * 15 14 13 17 17 N 1.29022 * 124.91619 * 89.69753 * 16 15 14 18 18 C 1.31789 * 117.11875 * 179.81130 * 17 16 15 19 19 C 1.33635 * 114.50359 * 0.47385 * 18 17 16 20 20 S 1.70979 * 124.91176 * 270.00027 * 16 15 14 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 26 26 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 27 27 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 28 28 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 29 29 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 30 30 H 1.09001 * 109.47146 * 300.00243 * 15 14 13 31 31 H 1.08998 * 109.46587 * 60.00003 * 15 14 13 32 32 H 1.08004 * 122.74439 * 180.21996 * 18 17 16 33 33 H 1.08004 * 126.03985 * 179.71976 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6622 0.4208 -4.7691 16 6 3.1676 -0.3234 -5.9782 17 7 2.4220 -0.9479 -6.8260 18 6 3.0276 -1.5455 -7.8325 19 6 4.3586 -1.4265 -7.8282 20 16 4.8127 -0.4685 -6.4208 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7089 1.1611 3.4845 25 1 1.4495 -1.4978 -1.4102 26 1 1.0871 0.6165 -2.5525 27 1 2.7588 1.0464 -2.1181 28 1 3.5917 -0.9260 -3.3683 29 1 1.9201 -1.3564 -3.8032 30 1 1.6669 0.8145 -4.9752 31 1 3.3384 1.2443 -4.5399 32 1 2.4921 -2.0906 -8.5959 33 1 5.0363 -1.8442 -8.5580 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308586352.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:22 Heat of formation + Delta-G solvation = 31.084498 kcal Electronic energy + Delta-G solvation = -14316.681822 eV Core-core repulsion = 11889.728266 eV Total energy + Delta-G solvation = -2426.953557 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75716 -36.54442 -34.26738 -32.21031 -30.13283 -28.20929 -25.79052 -25.07645 -23.40340 -21.13730 -20.20147 -19.92777 -18.04559 -16.27214 -15.73003 -15.15199 -14.84032 -14.55664 -14.25282 -13.85350 -13.38025 -12.98428 -12.55572 -12.07765 -11.75381 -11.62130 -11.47720 -11.14654 -10.89054 -10.77533 -10.62348 -10.28553 -10.09346 -9.85982 -9.69708 -9.50931 -9.03412 -8.92171 -8.33011 -7.19836 -5.95491 -3.98701 0.58822 1.24778 1.64062 2.72148 3.36741 3.40324 3.43948 4.03831 4.46622 4.86622 4.99539 5.09498 5.15730 5.34465 5.35913 5.61017 5.68648 5.77764 5.99833 6.02879 6.14949 6.48076 6.55062 6.73089 6.88089 7.13500 7.40694 7.63409 7.77227 7.91643 8.31085 8.57485 8.65877 9.08349 9.66518 11.11580 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.051697 B = 0.003818 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.482580 B = 7332.200995 C = 7580.124441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.686 5.686 13 C 0.062 3.938 14 C -0.108 4.108 15 C -0.046 4.046 16 C 0.067 3.933 17 N -0.480 5.480 18 C 0.040 3.960 19 C -0.271 4.271 20 S 0.119 5.881 21 H 0.005 0.995 22 H 0.027 0.973 23 H 0.088 0.912 24 H 0.260 0.740 25 H 0.325 0.675 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.174 0.826 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 -1.573 -18.689 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.204 1.204 11 H -0.203 1.203 12 N -0.315 5.315 13 C -0.069 4.069 14 C -0.148 4.148 15 C -0.088 4.088 16 C -0.211 4.211 17 N -0.195 5.195 18 C -0.111 4.111 19 C -0.410 4.410 20 S 0.373 5.627 21 H 0.024 0.976 22 H 0.046 0.954 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.141 0.859 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.191 0.809 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.523 -1.010 -17.881 19.060 hybrid contribution -1.143 -0.886 -0.171 1.456 sum 5.379 -1.896 -18.052 18.932 Atomic orbital electron populations 1.22430 1.00736 0.99185 1.00474 1.19172 0.89596 0.94415 0.86528 0.94880 1.21142 1.30201 1.12428 0.89665 0.92011 1.24958 0.95362 0.95221 0.99037 1.69878 1.37343 1.23216 1.23405 0.86563 0.79174 0.79607 0.82037 1.21477 1.20384 1.20292 1.60803 1.58093 1.09118 1.03491 1.21860 0.98476 0.96026 0.90512 1.21585 1.02731 0.97861 0.92612 1.20363 1.02710 0.97104 0.88611 1.27283 0.92717 1.00758 1.00355 1.66310 1.38626 1.10806 1.03719 1.21823 0.91068 1.00693 0.97554 1.27055 0.99966 1.09708 1.04314 1.84122 1.11234 1.47697 1.19668 0.97601 0.95375 0.89291 0.93044 0.85899 0.96169 0.91636 0.91035 0.91774 0.88779 0.89414 0.80946 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.34 2.57 -68.87 -0.18 5.17 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.50 -13.88 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.69 -14.63 6.23 -107.95 -0.67 -15.30 16 13 C 0.06 1.07 5.48 -3.82 -0.02 1.05 16 14 C -0.11 -1.54 5.46 -26.73 -0.15 -1.69 16 15 C -0.05 -0.56 5.80 -27.88 -0.16 -0.72 16 16 C 0.07 0.83 6.64 -13.46 -0.09 0.74 16 17 N -0.48 -6.40 10.54 -11.86 -0.13 -6.52 16 18 C 0.04 0.42 11.35 -19.18 -0.22 0.21 16 19 C -0.27 -2.51 11.37 29.12 0.33 -2.18 16 20 S 0.12 1.22 23.18 -107.50 -2.49 -1.27 16 21 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.32 6.64 8.47 -39.29 -0.33 6.31 16 26 H 0.02 0.35 7.44 -51.93 -0.39 -0.03 16 27 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -30.03 292.10 -8.58 -38.61 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.75 Total: 2.71 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.55 Total: -13.96 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.17 Total: -47.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.03 -8.58 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308586352.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.691 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds