Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86793 * 119.99686 * 2 1 4 4 H 1.48504 * 109.47386 * 274.65382 * 3 2 1 5 5 H 1.48501 * 109.47318 * 34.65988 * 3 2 1 6 6 H 1.48504 * 109.46872 * 154.65629 * 3 2 1 7 7 C 1.39892 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99994 * 162.15962 * 7 2 1 9 9 C 1.41211 * 120.00133 * 342.15290 * 7 2 1 10 10 C 1.40837 * 120.18095 * 155.14686 * 9 7 2 11 11 C 1.36436 * 119.81253 * 180.02562 * 10 9 7 12 12 C 1.39307 * 120.18638 * 0.02562 * 11 10 9 13 13 O 1.35669 * 119.81778 * 179.97438 * 12 11 10 14 14 C 1.42901 * 117.00145 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47517 * 179.97438 * 14 13 12 16 16 H 1.09006 * 109.46697 * 55.00070 * 15 14 13 17 17 O 1.42901 * 109.46989 * 295.00320 * 15 14 13 18 18 C 1.52995 * 109.47245 * 175.00003 * 15 14 13 19 19 F 1.39906 * 109.47058 * 185.00102 * 18 15 14 20 20 C 1.39315 * 120.36751 * 0.24972 * 12 11 10 21 21 C 1.36444 * 120.18051 * 359.48479 * 20 12 11 22 22 H 0.96995 * 120.00354 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.09133 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.90545 * 179.97438 * 11 10 9 25 25 H 1.08997 * 109.47401 * 299.99837 * 14 13 12 26 26 H 1.09003 * 109.47211 * 59.99976 * 14 13 12 27 27 H 0.96695 * 114.00381 * 299.99563 * 17 15 14 28 28 H 1.08998 * 109.47235 * 304.99897 * 18 15 14 29 29 H 1.08999 * 109.47168 * 65.00576 * 18 15 14 30 30 H 1.07995 * 119.91395 * 179.72394 * 20 12 11 31 31 H 1.08002 * 120.09687 * 180.25459 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3918 2.1033 -1.3955 5 1 1.4929 2.6222 0.7962 6 1 3.5860 1.4138 0.5993 7 6 2.0083 -1.2115 -0.0005 8 1 3.0493 -1.2339 -0.2871 9 6 1.3532 -2.4052 0.3737 10 6 1.8226 -3.6474 -0.0953 11 6 1.1836 -4.7960 0.2706 12 6 0.0695 -4.7424 1.1053 13 8 -0.5605 -5.8892 1.4640 14 6 -1.6962 -5.7643 2.3223 15 6 -2.2696 -7.1523 2.6147 16 1 -1.4855 -7.7910 3.0216 17 8 -2.7708 -7.7251 1.4053 18 6 -3.4067 -7.0306 3.6310 19 9 -3.8550 -8.3079 3.9845 20 6 -0.4048 -3.5173 1.5690 21 6 0.2260 -2.3598 1.2169 22 1 -0.4850 0.8400 0.0004 23 1 2.6859 -3.6907 -0.7427 24 1 1.5421 -5.7494 -0.0885 25 1 -1.3951 -5.2910 3.2568 26 1 -2.4554 -5.1535 1.8337 27 1 -3.4732 -7.2087 0.9871 28 1 -3.0457 -6.5134 4.5200 29 1 -4.2286 -6.4661 3.1907 30 1 -1.2717 -3.4839 2.2121 31 1 -0.1404 -1.4111 1.5805 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386258761.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = -128.519551 kcal Electronic energy + Delta-G solvation = -16412.128869 eV Core-core repulsion = 13379.748434 eV Total energy + Delta-G solvation = -3032.380435 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.78867 -39.05801 -37.38875 -36.03871 -33.38624 -31.22577 -29.68446 -29.12629 -26.19729 -24.59007 -22.34260 -20.99969 -20.45158 -17.44376 -17.30165 -16.95908 -16.61950 -16.01778 -15.25573 -15.22949 -14.78658 -14.06197 -13.96506 -13.74315 -12.99539 -12.69008 -12.46984 -12.07333 -11.80643 -11.52727 -11.32763 -11.15416 -11.05694 -10.89599 -10.64252 -10.07866 -9.98985 -9.82842 -9.41688 -9.05360 -7.70517 -7.06167 -6.77328 -4.29509 2.72565 2.91996 3.05568 3.09570 3.18064 3.57900 3.92034 4.19262 4.57210 4.60593 4.62788 4.81994 4.93247 5.15027 5.42987 5.52059 5.62548 5.85692 6.04091 6.23780 6.65823 6.84589 7.02477 7.23374 7.35504 7.50912 7.52805 7.84991 7.95864 8.10632 8.38960 8.60047 8.85987 8.94436 10.17685 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.050809 B = 0.004538 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.949440 B = 6169.148718 C = 6531.940804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.014 4.014 13 O -0.317 6.317 14 C 0.039 3.961 15 C 0.079 3.921 16 H 0.117 0.883 17 O -0.545 6.545 18 C 0.035 3.965 19 F -0.209 7.209 20 C -0.174 4.174 21 C -0.135 4.135 22 H 0.279 0.721 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.375 0.625 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 -5.495 5.490 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.215 4.215 11 C -0.129 4.129 12 C -0.057 4.057 13 O -0.233 6.233 14 C -0.038 4.038 15 C 0.019 3.981 16 H 0.135 0.865 17 O -0.350 6.350 18 C -0.020 4.020 19 F -0.190 7.190 20 C -0.193 4.193 21 C -0.155 4.155 22 H 0.090 0.910 23 H 0.119 0.881 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.222 0.778 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.402 -6.002 5.566 9.807 hybrid contribution -0.293 1.510 0.005 1.538 sum -5.695 -4.492 5.570 9.146 Atomic orbital electron populations 1.69837 1.07562 1.29086 1.36162 1.25878 0.94704 1.01257 0.92297 0.86329 0.80760 0.80768 0.79041 1.19603 1.20112 1.18447 1.19483 0.98131 0.91218 1.40461 0.90439 1.17603 0.91814 0.92192 0.89804 1.20614 1.03252 0.92221 1.05462 1.19624 0.95549 0.97750 0.99992 1.18589 0.97791 0.83744 1.05531 1.85863 1.41793 1.30770 1.64869 1.23001 0.89627 0.96122 0.95042 1.22557 0.95078 0.95108 0.85349 0.86544 1.86668 1.57811 1.52088 1.38425 1.22598 0.98053 0.81262 1.00132 1.92791 1.90691 1.42198 1.93368 1.20584 1.01335 0.92927 1.04436 1.20935 0.98544 0.96447 0.99531 0.90988 0.88129 0.88423 0.91979 0.92456 0.77787 0.89457 0.90092 0.88902 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.42 10.97 55.54 0.61 -19.81 16 2 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 7 C -0.46 -12.17 9.04 -37.83 -0.34 -12.51 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.74 16 10 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16 11 C -0.11 -2.57 9.92 -39.83 -0.40 -2.96 16 12 C -0.01 -0.31 6.71 -38.78 -0.26 -0.57 16 13 O -0.32 -6.38 10.09 -23.56 -0.24 -6.62 16 14 C 0.04 0.57 4.36 37.16 0.16 0.74 16 15 C 0.08 0.98 3.60 -26.73 -0.10 0.89 16 16 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 17 O -0.55 -7.51 13.30 -40.08 -0.53 -8.04 16 18 C 0.03 0.33 7.18 37.15 0.27 0.60 16 19 F -0.21 -2.58 17.35 2.25 0.04 -2.54 16 20 C -0.17 -3.98 8.96 -39.83 -0.36 -4.34 16 21 C -0.14 -3.45 8.64 -39.25 -0.34 -3.79 16 22 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 23 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 24 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 25 H 0.06 0.84 7.66 -51.93 -0.40 0.45 16 26 H 0.06 0.80 7.63 -51.93 -0.40 0.40 16 27 H 0.37 3.69 9.05 45.56 0.41 4.10 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.84 6.27 -52.49 -0.33 1.51 16 31 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -29.94 275.02 -6.13 -36.07 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.70 Total: 7.03 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.43 Total: -23.61 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.77 Total: -14.66 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.94 -6.13 -36.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386258761.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.449 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds