Wall clock time and date at job start Mon Mar 30 2020 04:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86805 * 119.99957 * 2 1 4 4 H 1.48496 * 109.46948 * 264.99925 * 3 2 1 5 5 H 1.48503 * 109.46723 * 24.99992 * 3 2 1 6 6 H 1.48502 * 109.47092 * 144.99643 * 3 2 1 7 7 C 1.40048 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00431 * 185.05092 * 7 2 1 9 9 C 1.46374 * 119.99964 * 5.05935 * 7 2 1 10 10 O 1.21690 * 120.00033 * 4.99890 * 9 7 2 11 11 N 1.34777 * 120.00344 * 185.00351 * 9 7 2 12 12 C 1.46856 * 120.21999 * 174.70686 * 11 9 7 13 13 C 1.54934 * 110.04318 * 133.23397 * 12 11 9 14 14 N 1.45658 * 107.69183 * 50.83426 * 13 12 11 15 15 C 1.46409 * 116.80787 * 174.45023 * 14 13 12 16 16 C 1.54755 * 106.03213 * 151.63943 * 15 14 13 17 17 H 1.08997 * 110.33708 * 237.59858 * 16 15 14 18 18 O 1.42906 * 110.42123 * 115.41031 * 16 15 14 19 19 C 1.55283 * 105.00023 * 356.48246 * 16 15 14 20 20 C 1.49281 * 109.81338 * 294.56733 * 14 13 12 21 21 H 1.08995 * 111.28974 * 308.29546 * 20 14 13 22 22 C 1.47658 * 120.21540 * 354.73012 * 11 9 7 23 23 H 0.96996 * 119.99882 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.41414 * 253.12155 * 12 11 9 25 25 H 1.08999 * 109.41602 * 12.91433 * 12 11 9 26 26 H 1.09003 * 109.45411 * 291.52415 * 13 12 11 27 27 H 1.08993 * 110.25426 * 170.60475 * 13 12 11 28 28 H 1.09004 * 110.14360 * 32.49910 * 15 14 13 29 29 H 1.08998 * 110.14866 * 270.78519 * 15 14 13 30 30 H 0.96698 * 113.99819 * 64.37114 * 18 16 15 31 31 H 1.09008 * 110.86559 * 95.95534 * 19 16 15 32 32 H 1.08999 * 110.86839 * 219.42072 * 19 16 15 33 33 H 1.09001 * 110.00685 * 110.92979 * 22 11 9 34 34 H 1.09003 * 110.08673 * 349.56161 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5939 1.9854 -1.3947 5 1 1.3892 2.6809 0.5917 6 1 3.4814 1.4731 0.8031 7 6 2.0070 -1.2128 0.0005 8 1 3.0839 -1.2146 0.0829 9 6 1.2795 -2.4781 -0.1107 10 8 0.0766 -2.4741 -0.2949 11 7 1.9418 -3.6475 -0.0090 12 6 1.2035 -4.9170 -0.0034 13 6 1.8715 -5.9240 -0.9731 14 7 3.2916 -5.9715 -0.6527 15 6 4.0978 -6.9603 -1.3710 16 6 5.5289 -6.3756 -1.4407 17 1 5.8538 -6.2917 -2.4778 18 8 6.4382 -7.1932 -0.7011 19 6 5.4201 -4.9682 -0.7938 20 6 3.9213 -4.6505 -0.9476 21 1 3.6911 -4.3196 -1.9603 22 6 3.4144 -3.6606 0.0981 23 1 -0.4850 0.8400 -0.0004 24 1 1.2080 -5.3343 1.0035 25 1 0.1746 -4.7392 -0.3162 26 1 1.7360 -5.5838 -1.9998 27 1 1.4322 -6.9139 -0.8505 28 1 3.7032 -7.1075 -2.3764 29 1 4.1045 -7.9053 -0.8278 30 1 6.5461 -8.0848 -1.0596 31 1 5.7039 -5.0014 0.2582 32 1 6.0282 -4.2437 -1.3355 33 1 3.7129 -3.9855 1.0948 34 1 3.8134 -2.6668 -0.1049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405272640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:19 Heat of formation + Delta-G solvation = -66.256067 kcal Electronic energy + Delta-G solvation = -17827.132116 eV Core-core repulsion = 14953.204684 eV Total energy + Delta-G solvation = -2873.927431 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.77106 -37.49943 -36.02620 -33.51125 -32.49843 -32.10934 -28.69793 -28.10743 -26.04446 -23.89860 -22.40102 -20.98873 -20.20712 -18.90853 -17.24155 -16.40025 -15.88994 -15.82936 -15.14165 -14.58795 -14.22139 -13.84363 -13.70912 -13.34215 -13.21265 -12.39626 -12.37336 -11.83182 -11.61020 -11.43607 -11.19948 -11.00841 -10.89289 -10.74764 -10.66217 -10.39493 -10.25819 -10.03890 -9.93213 -8.85541 -8.20497 -7.58204 -7.18656 -6.21628 -4.64856 3.13969 3.20544 3.23153 3.96186 4.11689 4.13591 4.52290 4.57945 4.61289 4.83232 5.05985 5.34125 5.40446 5.50646 5.61390 5.64121 5.70926 5.82130 5.88989 5.95485 6.00916 6.22584 6.26431 6.46501 6.57027 6.72821 7.08939 7.38800 7.45074 7.54960 7.61938 8.13437 8.36133 9.01532 9.42544 10.56809 10.75220 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034713 B = 0.006719 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.411660 B = 4166.417028 C = 4842.618708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.558 3.442 10 O -0.580 6.580 11 N -0.644 5.644 12 C 0.129 3.871 13 C 0.047 3.953 14 N -0.530 5.530 15 C 0.019 3.981 16 C 0.096 3.904 17 H 0.061 0.939 18 O -0.559 6.559 19 C -0.106 4.106 20 C 0.052 3.948 21 H 0.059 0.941 22 C 0.142 3.858 23 H 0.269 0.731 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.374 0.626 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.532 -10.733 -3.306 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.364 3.636 10 O -0.463 6.463 11 N -0.382 5.382 12 C 0.004 3.996 13 C -0.082 4.082 14 N -0.256 5.256 15 C -0.110 4.110 16 C 0.037 3.963 17 H 0.078 0.922 18 O -0.364 6.364 19 C -0.145 4.145 20 C -0.057 4.057 21 H 0.077 0.923 22 C 0.018 3.982 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.221 0.779 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.687 -10.211 -2.521 14.299 hybrid contribution 0.331 0.233 -1.316 1.377 sum 10.018 -9.977 -3.837 14.650 Atomic orbital electron populations 1.70000 1.07129 1.27389 1.35169 1.25723 0.94583 1.00299 0.92516 0.86415 0.80144 0.81371 0.79014 1.19656 1.20493 1.18859 1.20972 0.93956 0.89359 1.53906 0.90871 1.18283 0.86756 0.82253 0.76266 1.90582 1.15206 1.86225 1.54318 1.48275 1.05056 1.05398 1.79510 1.21365 0.96688 0.84336 0.97172 1.22642 0.87652 0.99698 0.98188 1.63060 1.02417 1.03771 1.56353 1.23291 0.93925 0.97048 0.96687 1.22948 0.87605 0.91529 0.94244 0.92154 1.86577 1.65247 1.27810 1.56752 1.22387 0.95610 0.93476 1.02985 1.23223 0.92494 0.90724 0.99238 0.92256 1.21428 0.82115 0.98413 0.96255 0.92048 0.93508 0.89647 0.94938 0.90769 0.94374 0.90109 0.77945 0.89226 0.90373 0.92662 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.00 11.87 55.55 0.66 -22.34 16 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 19.97 29.56 -169.99 -5.03 14.94 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.55 -15.26 8.83 -35.63 -0.31 -15.57 16 8 H 0.07 1.85 5.72 -52.49 -0.30 1.55 16 9 C 0.56 16.04 7.60 -12.99 -0.10 15.94 16 10 O -0.58 -18.90 14.47 5.20 0.08 -18.83 16 11 N -0.64 -15.05 3.03 -173.13 -0.53 -15.58 16 12 C 0.13 2.64 6.60 -2.83 -0.02 2.62 16 13 C 0.05 0.79 6.01 -3.48 -0.02 0.76 16 14 N -0.53 -8.34 4.67 -223.35 -1.04 -9.39 16 15 C 0.02 0.24 6.66 -3.17 -0.02 0.22 16 16 C 0.10 1.12 4.39 -24.60 -0.11 1.01 16 17 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 18 O -0.56 -6.27 13.29 -35.23 -0.47 -6.74 16 19 C -0.11 -1.41 6.32 -25.01 -0.16 -1.57 16 20 C 0.05 0.84 2.84 -66.05 -0.19 0.65 16 21 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 22 C 0.14 2.75 5.95 -3.58 -0.02 2.73 16 23 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.09 1.91 7.00 -51.93 -0.36 1.55 16 26 H 0.03 0.56 8.04 -51.93 -0.42 0.15 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.44 8.03 -51.93 -0.42 0.03 16 29 H 0.08 0.93 7.99 -51.93 -0.41 0.52 16 30 H 0.37 2.42 9.12 45.56 0.42 2.83 16 31 H 0.09 1.27 8.04 -51.92 -0.42 0.85 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.87 5.47 -51.93 -0.28 1.58 16 LS Contribution 275.36 15.07 4.15 4.15 Total: -1.00 -34.78 275.36 -7.09 -41.87 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.86 Total: 2.76 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -1.04 Total: 9.15 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.91 Total: -47.31 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.39 Total: -25.56 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.78 -7.09 -41.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405272640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.388 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds