Wall clock time and date at job start Mon Mar 30 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00091 * 2 1 4 4 H 1.48501 * 109.46821 * 269.99870 * 3 2 1 5 5 H 1.48498 * 109.46944 * 29.99520 * 3 2 1 6 6 H 1.48495 * 109.47269 * 150.00060 * 3 2 1 7 7 C 1.38948 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00274 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00193 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00072 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99905 * 179.97438 * 10 9 7 13 13 C 1.52999 * 109.47190 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.79361 * 31.12131 * 13 12 10 15 15 C 1.53061 * 109.62827 * 270.62402 * 13 12 10 16 16 C 1.51786 * 110.74939 * 325.21917 * 15 13 12 17 17 C 1.51779 * 113.81414 * 293.18469 * 16 15 13 18 18 C 1.52997 * 110.87419 * 66.99705 * 17 16 15 19 19 N 1.47189 * 108.80279 * 273.45701 * 18 17 16 20 20 C 1.33635 * 120.25355 * 71.80011 * 19 18 17 21 21 O 1.21273 * 119.83392 * 179.84320 * 20 19 18 22 22 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99316 * 359.97438 * 9 7 2 24 24 H 1.08998 * 109.47211 * 59.99465 * 12 10 9 25 25 H 1.09001 * 109.47124 * 300.00238 * 12 10 9 26 26 H 1.09007 * 109.21847 * 204.89206 * 15 13 12 27 27 H 1.08995 * 109.18669 * 85.52795 * 15 13 12 28 28 H 1.09008 * 108.61327 * 172.06989 * 16 15 13 29 29 H 1.08993 * 108.50407 * 54.22862 * 16 15 13 30 30 H 1.09005 * 109.19595 * 306.64307 * 17 16 15 31 31 H 1.08994 * 109.16089 * 187.33283 * 17 16 15 32 32 H 1.08994 * 109.60346 * 33.29219 * 18 17 16 33 33 H 1.09000 * 109.59795 * 153.62391 * 18 17 16 34 34 H 0.97004 * 119.78516 * 252.05434 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2101 -3.5578 0.0030 12 6 1.2438 -4.8630 0.0022 13 6 2.2380 -6.0259 0.0040 14 1 3.1447 -5.7355 0.5345 15 6 2.5852 -6.4078 -1.4370 16 6 1.3817 -6.2310 -2.3450 17 6 0.2457 -7.1937 -2.0511 18 6 -0.3761 -6.9022 -0.6839 19 7 0.3840 -7.6272 0.3472 20 6 1.6143 -7.2275 0.6824 21 8 2.2326 -7.8287 1.5350 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 0.0005 24 1 0.6174 -4.9213 -0.8880 25 1 0.6167 -4.9201 0.8919 26 1 2.9059 -7.4492 -1.4649 27 1 3.3975 -5.7727 -1.7901 28 1 1.7008 -6.3742 -3.3774 29 1 1.0116 -5.2119 -2.2343 30 1 0.6291 -8.2141 -2.0603 31 1 -0.5185 -7.0911 -2.8216 32 1 -0.3343 -5.8316 -0.4840 33 1 -1.4138 -7.2357 -0.6756 34 1 -0.0095 -8.4001 0.7816 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407996016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:15 Heat of formation + Delta-G solvation = -92.605596 kcal Electronic energy + Delta-G solvation = -17789.797731 eV Core-core repulsion = 14914.727698 eV Total energy + Delta-G solvation = -2875.070033 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.92597 -39.90764 -38.04792 -36.06170 -34.95254 -33.31216 -32.73877 -29.97430 -27.32399 -25.76680 -24.94014 -22.11669 -20.94848 -20.22338 -19.71256 -18.28225 -17.63915 -17.60863 -16.58270 -16.54797 -15.78584 -15.50450 -15.17666 -15.07248 -14.69910 -14.41279 -14.05350 -13.69483 -13.47635 -12.96659 -12.78418 -12.69976 -12.43623 -12.35911 -12.12033 -11.71422 -11.54993 -11.48768 -11.18762 -10.77675 -10.32299 -10.01600 -9.96205 -8.46759 -5.95186 1.38035 1.42736 1.54296 1.57590 2.03346 2.29645 2.37756 3.09593 3.19958 3.56422 3.75427 3.82097 3.98164 4.11742 4.22726 4.42651 4.45473 4.55251 4.61045 4.79215 4.89416 4.95549 5.08145 5.15881 5.22286 5.32322 5.42110 5.52330 5.95706 6.00609 6.23787 6.59044 7.12321 7.23737 7.55395 8.10979 8.70317 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036946 B = 0.005978 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.682388 B = 4682.701758 C = 4834.715620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.990 3.010 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.568 5.568 10 C 0.437 3.563 11 O -0.632 6.632 12 C -0.134 4.134 13 C -0.088 4.088 14 H 0.078 0.922 15 C -0.101 4.101 16 C -0.134 4.134 17 C -0.133 4.133 18 C 0.068 3.932 19 N -0.705 5.705 20 C 0.527 3.473 21 O -0.603 6.603 22 H 0.278 0.722 23 H 0.398 0.602 24 H 0.149 0.851 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -11.975 -5.985 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.204 5.204 10 C 0.225 3.775 11 O -0.520 6.520 12 C -0.173 4.173 13 C -0.110 4.110 14 H 0.097 0.903 15 C -0.139 4.139 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.054 4.054 19 N -0.356 5.356 20 C 0.314 3.686 21 O -0.484 6.484 22 H 0.088 0.912 23 H 0.233 0.767 24 H 0.166 0.834 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.196 -11.945 -5.657 14.597 hybrid contribution 0.163 0.674 0.445 0.824 sum -6.033 -11.271 -5.212 13.806 Atomic orbital electron populations 1.69649 1.06669 1.29340 1.50033 1.25976 0.96536 1.02210 0.96178 0.84977 0.77847 0.77102 0.78728 1.19424 1.19531 1.20130 1.19673 0.92716 0.84145 1.50128 0.90480 1.41901 1.09355 1.04554 1.64623 1.20842 0.88137 0.86311 0.82200 1.90490 1.16197 1.87992 1.57351 1.22333 0.98529 0.90082 1.06367 1.21274 0.99114 0.91588 0.99060 0.90341 1.21182 0.99618 1.01328 0.91754 1.21344 0.95115 1.00771 0.99819 1.21795 0.98123 0.99604 0.97538 1.22766 0.96833 0.99467 0.86320 1.45868 1.15140 1.33153 1.41391 1.20637 0.82057 0.84998 0.80872 1.90688 1.63643 1.59020 1.35099 0.91213 0.76734 0.83427 0.88801 0.91431 0.92240 0.90153 0.91395 0.91171 0.87547 0.88645 0.85717 0.75467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.04 13.05 21.66 0.28 -47.76 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 0.99 42.36 29.55 68.60 2.03 44.38 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.33 5.29 -306.99 -1.62 -29.95 16 10 C 0.44 20.34 7.77 87.66 0.68 21.03 16 11 O -0.63 -34.92 15.00 -3.04 -0.05 -34.96 16 12 C -0.13 -4.37 3.28 29.85 0.10 -4.28 16 13 C -0.09 -2.97 2.35 -11.29 -0.03 -2.99 16 14 H 0.08 3.35 6.99 -2.39 -0.02 3.33 16 15 C -0.10 -2.84 5.48 30.22 0.17 -2.67 16 16 C -0.13 -2.74 5.19 29.79 0.15 -2.58 16 17 C -0.13 -1.85 5.74 30.19 0.17 -1.67 16 18 C 0.07 0.98 6.37 86.25 0.55 1.53 16 19 N -0.70 -14.52 5.30 -462.26 -2.45 -16.97 16 20 C 0.53 16.53 6.45 88.07 0.57 17.10 16 21 O -0.60 -24.30 17.92 -3.01 -0.05 -24.35 16 22 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 23 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 24 H 0.15 3.78 2.80 -2.39 -0.01 3.77 16 25 H 0.09 2.82 7.57 -2.39 -0.02 2.81 16 26 H 0.07 1.77 7.86 -2.38 -0.02 1.75 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 1.55 5.55 -2.39 -0.01 1.53 16 30 H 0.07 1.00 8.05 -2.38 -0.02 0.99 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.61 3.62 -2.39 -0.01 1.60 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.41 6.95 8.92 -92.71 -0.83 6.12 16 Total: -1.00 -73.28 272.53 1.38 -71.90 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.41 Total: 30.32 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 3.64 Total: 7.39 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -3.79 Total: -94.68 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.10 Total: -59.32 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -73.28 1.38 -71.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407996016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.703 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds