Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 11 16 16 H 1.09005 * 110.85394 * 325.69849 * 15 14 12 17 17 C 1.54483 * 110.97202 * 89.48668 * 15 14 12 18 18 N 1.46860 * 105.42395 * 92.71512 * 17 15 14 19 19 C 1.34421 * 111.30971 * 17.02211 * 18 17 15 20 20 O 1.21284 * 124.93951 * 179.55344 * 19 18 17 21 21 C 1.51281 * 110.11712 * 359.58747 * 19 18 17 22 22 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 30 30 H 1.08996 * 110.24441 * 211.70608 * 17 15 14 31 31 H 1.08998 * 110.24197 * 333.70520 * 17 15 14 32 32 H 0.96994 * 124.34373 * 197.01917 * 18 17 15 33 33 H 1.09003 * 110.48292 * 225.07303 * 21 19 18 34 34 H 1.09000 * 110.59903 * 102.48185 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0032 14 7 2.0101 -7.4033 -0.0019 15 6 2.9620 -8.5168 -0.0020 16 1 3.8538 -8.2649 -0.5760 17 6 3.3311 -8.9288 1.4404 18 7 2.3901 -9.9995 1.7937 19 6 1.8031 -10.5147 0.6996 20 8 0.9911 -11.4155 0.7060 21 6 2.3034 -9.8079 -0.5408 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8725 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8921 27 1 0.8543 -5.0449 0.8894 28 1 0.8525 -5.0447 -0.8905 29 1 1.0564 -7.5804 -0.0012 30 1 4.3554 -9.2994 1.4764 31 1 3.2114 -8.0824 2.1167 32 1 2.2147 -10.2969 2.7001 33 1 1.4722 -9.5645 -1.2026 34 1 3.0378 -10.4219 -1.0622 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594336454.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -92.189725 kcal Electronic energy + Delta-G solvation = -16523.677831 eV Core-core repulsion = 13648.625832 eV Total energy + Delta-G solvation = -2875.051999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86376 -39.26968 -36.80743 -34.26144 -34.02419 -32.08682 -30.62554 -28.14614 -27.35153 -24.07761 -22.02900 -20.97814 -20.62966 -19.85238 -17.80622 -17.07228 -16.83675 -16.05327 -15.55083 -15.32100 -15.03166 -14.44206 -14.18484 -13.78667 -13.55410 -13.20178 -12.79624 -12.32455 -12.27504 -12.10813 -11.80849 -11.38272 -10.82529 -10.64499 -10.55395 -10.21583 -9.84013 -9.72019 -9.58150 -9.30555 -9.20221 -9.04511 -8.33678 -5.99301 -4.00907 2.24763 2.75095 3.02089 3.03918 3.33640 3.39649 3.44090 3.94633 4.07570 4.45447 4.47795 4.81470 5.00891 5.07719 5.20724 5.36851 5.38212 5.48891 5.65956 5.66576 6.19734 6.28699 6.40121 6.64330 6.68314 6.88694 7.12536 7.41406 7.68643 7.81030 7.89065 8.01110 8.29234 8.44766 9.06237 9.63234 11.12173 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.062617 B = 0.003597 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.057964 B = 7782.713853 C = 7967.343752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.516 3.484 13 O -0.533 6.533 14 N -0.734 5.734 15 C 0.133 3.867 16 H 0.119 0.881 17 C 0.087 3.913 18 N -0.730 5.730 19 C 0.518 3.482 20 O -0.536 6.536 21 C -0.165 4.165 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.402 0.598 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.411 0.589 33 H 0.111 0.889 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -19.060 1.078 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.305 3.695 13 O -0.409 6.409 14 N -0.388 5.388 15 C 0.027 3.973 16 H 0.136 0.864 17 C -0.039 4.039 18 N -0.385 5.385 19 C 0.304 3.696 20 O -0.413 6.413 21 C -0.206 4.206 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.236 0.764 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.249 0.751 33 H 0.129 0.871 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.688 -19.187 0.956 19.774 hybrid contribution -0.105 0.745 0.478 0.891 sum 4.583 -18.442 1.434 19.057 Atomic orbital electron populations 1.69965 1.06044 1.26566 1.51132 1.25025 0.94859 0.99273 0.95369 0.86590 0.79886 0.83407 0.78114 1.20666 1.21269 1.19833 1.21265 0.93179 0.91004 1.50240 0.92570 1.19136 0.93977 0.91476 0.97156 1.21450 0.98642 0.91484 1.01709 1.21871 0.98146 0.93964 1.03940 1.21343 0.90490 0.83546 0.74130 1.90686 1.17229 1.84630 1.48318 1.46205 1.09792 1.05356 1.77415 1.21764 0.94551 0.85816 0.95192 0.86358 1.22676 0.93269 0.90485 0.97492 1.46272 1.44176 1.38578 1.09504 1.20847 0.80062 0.82205 0.86506 1.90777 1.33587 1.30110 1.86824 1.22681 1.03771 0.96680 0.97419 0.93051 0.96589 0.96606 0.92693 0.92634 0.89272 0.89173 0.76353 0.89852 0.89410 0.75059 0.87089 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.09 -1.95 4.44 -26.73 -0.12 -2.07 16 11 C -0.14 -2.12 5.70 -27.88 -0.16 -2.28 16 12 C 0.52 7.20 7.83 -10.98 -0.09 7.11 16 13 O -0.53 -9.33 15.67 5.56 0.09 -9.24 16 14 N -0.73 -7.10 5.14 -52.22 -0.27 -7.37 16 15 C 0.13 1.06 3.48 -66.30 -0.23 0.83 16 16 H 0.12 1.00 7.63 -51.93 -0.40 0.60 16 17 C 0.09 0.62 7.52 -3.07 -0.02 0.60 16 18 N -0.73 -5.58 6.24 -59.13 -0.37 -5.94 16 19 C 0.52 5.05 8.43 -10.86 -0.09 4.95 16 20 O -0.54 -7.53 18.03 5.55 0.10 -7.43 16 21 C -0.16 -1.14 6.48 -26.74 -0.17 -1.31 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 26 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.40 3.18 8.62 -40.82 -0.35 2.82 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.41 2.68 8.96 -40.82 -0.37 2.31 16 33 H 0.11 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 295.10 15.07 4.45 4.45 Total: -1.00 -34.80 295.10 -6.59 -41.39 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.87 Total: -1.10 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.43 Total: -5.39 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.10 Total: -39.41 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.19 Total: -16.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.80 -6.59 -41.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594336454.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.797 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds