Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46912 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 11 16 16 H 1.09005 * 110.85394 * 325.69849 * 15 14 12 17 17 C 1.54483 * 110.97202 * 89.48668 * 15 14 12 18 18 N 1.46860 * 105.42395 * 92.71512 * 17 15 14 19 19 C 1.34421 * 111.30971 * 17.02211 * 18 17 15 20 20 O 1.21284 * 124.93951 * 179.55344 * 19 18 17 21 21 C 1.51281 * 110.11712 * 359.58747 * 19 18 17 22 22 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 30 30 H 1.08996 * 110.24441 * 211.70608 * 17 15 14 31 31 H 1.08998 * 110.24197 * 333.70520 * 17 15 14 32 32 H 0.96994 * 124.34373 * 197.01917 * 18 17 15 33 33 H 1.09003 * 110.48292 * 225.07303 * 21 19 18 34 34 H 1.09000 * 110.59903 * 102.48185 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4594 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0032 14 7 2.0101 -7.4033 -0.0019 15 6 2.9620 -8.5168 -0.0020 16 1 3.8538 -8.2649 -0.5760 17 6 3.3311 -8.9288 1.4404 18 7 2.3901 -9.9995 1.7937 19 6 1.8031 -10.5147 0.6996 20 8 0.9911 -11.4155 0.7060 21 6 2.3034 -9.8079 -0.5408 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8725 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8921 27 1 0.8543 -5.0449 0.8894 28 1 0.8525 -5.0447 -0.8905 29 1 1.0564 -7.5804 -0.0012 30 1 4.3554 -9.2994 1.4764 31 1 3.2114 -8.0824 2.1167 32 1 2.2147 -10.2969 2.7001 33 1 1.4722 -9.5645 -1.2026 34 1 3.0378 -10.4219 -1.0622 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594336454.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -119.346167 kcal Electronic energy + Delta-G solvation = -16524.855423 eV Core-core repulsion = 13648.625832 eV Total energy + Delta-G solvation = -2876.229591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.65039 -40.32289 -37.68625 -36.08736 -34.94179 -33.98283 -31.47543 -29.61312 -28.27405 -25.84854 -23.13680 -21.92223 -21.64524 -21.17123 -18.74369 -18.37412 -17.93398 -17.52461 -16.70349 -16.46350 -16.18138 -15.85052 -15.23773 -14.83528 -14.57454 -14.27144 -14.16217 -13.79259 -13.45834 -13.13355 -12.95927 -12.74151 -12.58060 -12.48537 -12.36769 -11.51736 -11.44094 -11.24373 -11.01987 -10.77452 -10.52797 -10.35944 -10.01755 -8.18817 -6.28623 1.41283 1.42070 1.50263 1.53554 1.66804 2.13575 2.38425 2.43277 3.14483 3.31168 3.43156 3.80577 3.93782 4.21625 4.27242 4.31837 4.56565 4.66640 4.74918 4.82532 4.91032 5.01171 5.15078 5.23073 5.45783 5.57387 5.75574 5.78549 5.89682 5.97763 6.29110 6.50928 6.87691 7.18755 7.25913 7.40260 8.92656 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.062617 B = 0.003597 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.057964 B = 7782.713853 C = 7967.343752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.023 3.977 10 C -0.082 4.082 11 C -0.134 4.134 12 C 0.525 3.475 13 O -0.572 6.572 14 N -0.715 5.715 15 C 0.131 3.869 16 H 0.121 0.879 17 C 0.090 3.910 18 N -0.720 5.720 19 C 0.513 3.487 20 O -0.585 6.585 21 C -0.151 4.151 22 H 0.264 0.736 23 H 0.000 1.000 24 H -0.001 1.001 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.413 0.587 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.119 0.881 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 -19.527 0.906 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.120 4.120 11 C -0.174 4.174 12 C 0.313 3.687 13 O -0.451 6.451 14 N -0.368 5.368 15 C 0.025 3.975 16 H 0.139 0.861 17 C -0.036 4.036 18 N -0.375 5.375 19 C 0.300 3.700 20 O -0.466 6.466 21 C -0.192 4.192 22 H 0.073 0.927 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.250 0.750 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.255 0.745 33 H 0.137 0.863 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.450 -19.677 0.800 20.433 hybrid contribution -0.355 0.865 0.558 1.089 sum 5.095 -18.812 1.357 19.536 Atomic orbital electron populations 1.70073 1.07544 1.27732 1.51735 1.25916 0.95801 1.03108 0.94778 0.85505 0.78668 0.78718 0.78517 1.19757 1.20527 1.19114 1.21715 0.93415 0.92784 1.50488 0.92869 1.19042 0.94315 0.92582 0.95430 1.21152 0.97544 0.92810 1.00500 1.21695 0.98111 0.91935 1.05631 1.20904 0.89356 0.84459 0.74005 1.90680 1.18507 1.85318 1.50576 1.45988 1.10851 1.04456 1.75553 1.21915 0.94242 0.85382 0.95951 0.86127 1.22704 0.94147 0.90071 0.96628 1.46299 1.43538 1.38038 1.09601 1.21276 0.79337 0.81645 0.87715 1.90758 1.35850 1.32411 1.87562 1.22668 1.04472 0.95719 0.96295 0.92737 0.98189 0.98235 0.93884 0.93813 0.87704 0.87490 0.75008 0.87690 0.90155 0.74491 0.86268 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.08 -3.39 4.44 30.59 0.14 -3.26 16 11 C -0.13 -3.92 5.70 29.85 0.17 -3.75 16 12 C 0.52 13.80 7.83 87.66 0.69 14.48 16 13 O -0.57 -19.44 15.67 -3.02 -0.05 -19.49 16 14 N -0.72 -12.17 5.14 -437.53 -2.25 -14.42 16 15 C 0.13 1.75 3.48 46.05 0.16 1.91 16 16 H 0.12 1.71 7.63 -2.38 -0.02 1.69 16 17 C 0.09 1.08 7.52 86.82 0.65 1.73 16 18 N -0.72 -9.63 6.24 -459.59 -2.87 -12.50 16 19 C 0.51 9.10 8.43 87.90 0.74 9.84 16 20 O -0.59 -16.02 18.03 -3.04 -0.05 -16.08 16 21 C -0.15 -1.67 6.48 30.59 0.20 -1.47 16 22 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 23 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 16 24 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 26 H 0.04 1.88 8.10 -2.39 -0.02 1.87 16 27 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.41 5.42 8.62 -92.70 -0.80 4.62 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 32 H 0.42 4.79 8.96 -92.71 -0.83 3.96 16 33 H 0.12 1.19 8.06 -2.39 -0.02 1.17 16 34 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.67 295.10 0.17 -75.51 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -0.51 Total: 6.03 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 3.59 Total: -9.85 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -4.83 Total: -82.68 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.10 Total: -35.57 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.67 0.17 -75.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594336454.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.839 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds