Wall clock time and date at job start Mon Mar 30 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86792 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47053 * 269.99613 * 3 2 1 5 5 H 1.48499 * 109.47586 * 29.99720 * 3 2 1 6 6 H 1.48500 * 109.46979 * 150.00256 * 3 2 1 7 7 C 1.38952 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00346 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99601 * 179.97438 * 7 2 1 10 10 C 1.34782 * 120.00214 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99566 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00231 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99906 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46934 * 180.02562 * 14 13 12 16 16 C 1.53005 * 119.80691 * 109.76969 * 15 14 13 17 17 C 1.53006 * 60.65272 * 112.30702 * 16 15 14 18 18 H 1.08998 * 119.80662 * 246.66316 * 17 16 15 19 19 C 1.54474 * 118.06410 * 90.40949 * 17 16 15 20 20 O 1.44430 * 104.80551 * 321.12484 * 19 17 16 21 21 C 1.44427 * 105.27067 * 319.49062 * 20 19 17 22 22 H 0.96999 * 119.99899 * 0.02562 * 1 2 3 23 23 H 0.97008 * 120.00350 * 0.02562 * 9 7 2 24 24 H 1.09007 * 109.46921 * 60.00575 * 12 10 9 25 25 H 1.09000 * 109.47539 * 300.00708 * 12 10 9 26 26 H 1.00901 * 111.00086 * 56.05407 * 13 12 10 27 27 H 1.09000 * 109.47375 * 60.00382 * 14 13 12 28 28 H 1.08999 * 109.47085 * 299.99823 * 14 13 12 29 29 H 1.08991 * 117.43340 * 4.63143 * 16 15 14 30 30 H 1.09001 * 117.42666 * 219.98106 * 16 15 14 31 31 H 1.08994 * 110.37760 * 79.95725 * 19 17 16 32 32 H 1.09003 * 110.37167 * 202.29889 * 19 17 16 33 33 H 1.09008 * 110.36844 * 159.34320 * 21 20 19 34 34 H 1.08994 * 110.37370 * 281.56334 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4211 0.0020 12 6 5.5607 -2.3707 -0.0001 13 7 6.0503 -3.7556 0.0007 14 6 7.5188 -3.7949 0.0003 15 6 7.9900 -5.2505 0.0005 16 6 8.6511 -5.8361 -1.2489 17 6 9.4864 -5.6354 0.0172 18 1 10.2917 -4.9008 0.0243 19 6 9.5632 -6.7998 1.0294 20 8 8.2329 -7.3621 1.0467 21 6 7.3399 -6.2278 1.0047 22 1 -0.4850 0.8400 -0.0004 23 1 3.8648 -0.3633 -0.0004 24 1 5.9247 -1.8557 0.8890 25 1 5.9234 -1.8579 -0.8910 26 1 5.6743 -4.2726 -0.7799 27 1 7.8960 -3.2903 0.8897 28 1 7.8954 -3.2916 -0.8902 29 1 8.8344 -5.1599 -2.0838 30 1 8.3911 -6.8588 -1.5220 31 1 10.2857 -7.5448 0.6967 32 1 9.8300 -6.4262 2.0180 33 1 6.3545 -6.5335 0.6529 34 1 7.2643 -5.7677 1.9899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689229896.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:42 Heat of formation + Delta-G solvation = -40.088486 kcal Electronic energy + Delta-G solvation = -16774.995550 eV Core-core repulsion = 13902.202830 eV Total energy + Delta-G solvation = -2872.792720 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53418 -38.45125 -35.87200 -34.28185 -33.73471 -31.66532 -29.35034 -27.47806 -25.83737 -24.96557 -23.16007 -20.82930 -19.70197 -19.27817 -18.33874 -16.79070 -15.98964 -15.73819 -15.68177 -15.01312 -14.88492 -14.37883 -13.79310 -13.62436 -13.39524 -13.00561 -12.78060 -12.49888 -12.11903 -12.05486 -11.80298 -11.59629 -11.26984 -11.13218 -10.60333 -10.30329 -10.09741 -9.97986 -9.58201 -9.57045 -8.60859 -8.21152 -8.15698 -6.31464 -3.82940 3.02012 3.05861 3.14344 3.23609 3.73359 3.76921 4.04676 4.09994 4.47507 4.54982 4.66460 4.68610 4.95017 5.07976 5.20946 5.31227 5.37319 5.48034 5.50773 5.57729 5.61891 5.75543 5.78010 5.78563 5.91906 5.95449 5.97839 6.64401 7.06116 7.54661 7.58138 8.14158 8.59334 8.94602 9.41951 9.82147 10.81707 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.056442 B = 0.004205 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.962311 B = 6657.661192 C = 6926.441613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.666 5.666 14 C 0.108 3.892 15 C -0.161 4.161 16 C -0.134 4.134 17 C -0.200 4.200 18 H 0.121 0.879 19 C 0.072 3.928 20 O -0.378 6.378 21 C 0.090 3.910 22 H 0.273 0.727 23 H 0.370 0.630 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.353 0.647 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.445 -5.364 -0.505 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.445 6.445 12 C -0.085 4.085 13 N -0.298 5.298 14 C -0.022 4.022 15 C -0.161 4.161 16 C -0.171 4.171 17 C -0.219 4.219 18 H 0.139 0.861 19 C -0.005 4.005 20 O -0.297 6.297 21 C 0.014 3.986 22 H 0.084 0.916 23 H 0.203 0.797 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.173 0.827 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.690 -6.248 0.205 20.659 hybrid contribution 0.900 2.107 -0.902 2.462 sum 20.591 -4.141 -0.697 21.014 Atomic orbital electron populations 1.69624 1.05646 1.27497 1.49365 1.25041 0.95496 0.97976 0.97657 0.86664 0.79795 0.84044 0.78834 1.19675 1.20156 1.19493 1.19439 0.79244 0.96654 1.48065 0.86264 1.42207 1.07537 1.06149 1.67128 1.19693 0.88159 0.84579 0.84021 1.90571 1.69408 1.30923 1.53634 1.21704 0.95122 0.90359 1.01274 1.60004 1.05538 1.12650 1.51649 1.21210 0.88695 0.91787 1.00479 1.23180 0.94824 0.97247 1.00873 1.22975 1.00590 1.02663 0.90845 1.24106 0.95109 1.02131 1.00569 0.86096 1.22866 0.86084 0.94448 0.97070 1.89161 1.15957 1.29275 1.95300 1.22742 0.93983 0.84668 0.97233 0.91609 0.79702 0.89463 0.93767 0.82718 0.90655 0.95008 0.88029 0.88388 0.89117 0.91553 0.87915 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.04 5.09 -10.96 -0.06 -14.10 16 10 C 0.45 10.17 7.82 -10.99 -0.09 10.08 16 11 O -0.56 -15.12 15.78 5.54 0.09 -15.03 16 12 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 13 N -0.67 -10.10 5.78 -115.06 -0.67 -10.76 16 14 C 0.11 1.25 6.04 -3.82 -0.02 1.23 16 15 C -0.16 -1.78 2.73 -152.94 -0.42 -2.19 16 16 C -0.13 -1.31 9.65 -26.73 -0.26 -1.57 16 17 C -0.20 -1.83 7.17 -89.05 -0.64 -2.47 16 18 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 19 C 0.07 0.68 7.53 37.93 0.29 0.97 16 20 O -0.38 -4.83 11.31 -35.23 -0.40 -5.22 16 21 C 0.09 1.13 6.94 37.93 0.26 1.39 16 22 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.35 5.65 8.43 -39.29 -0.33 5.32 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.40 8.14 -51.92 -0.42 0.97 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -32.26 289.39 -6.53 -38.78 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -4.76 Total: 11.98 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.15 Total: 0.42 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.05 Total: -49.88 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.31 Total: -20.26 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.26 -6.53 -38.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689229896.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.305 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds