Wall clock time and date at job start Mon Mar 30 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86792 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47053 * 269.99613 * 3 2 1 5 5 H 1.48499 * 109.47586 * 29.99720 * 3 2 1 6 6 H 1.48500 * 109.46979 * 150.00256 * 3 2 1 7 7 C 1.38952 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00346 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99601 * 179.97438 * 7 2 1 10 10 C 1.34782 * 120.00214 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99566 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00231 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47010 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99906 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46934 * 180.02562 * 14 13 12 16 16 C 1.53005 * 119.80691 * 109.76969 * 15 14 13 17 17 C 1.53006 * 60.65272 * 112.30702 * 16 15 14 18 18 H 1.08998 * 119.80662 * 246.66316 * 17 16 15 19 19 C 1.54474 * 118.06410 * 90.40949 * 17 16 15 20 20 O 1.44430 * 104.80551 * 321.12484 * 19 17 16 21 21 C 1.44427 * 105.27067 * 319.49062 * 20 19 17 22 22 H 0.96999 * 119.99899 * 0.02562 * 1 2 3 23 23 H 0.97008 * 120.00350 * 0.02562 * 9 7 2 24 24 H 1.09007 * 109.46921 * 60.00575 * 12 10 9 25 25 H 1.09000 * 109.47539 * 300.00708 * 12 10 9 26 26 H 1.00901 * 111.00086 * 56.05407 * 13 12 10 27 27 H 1.09000 * 109.47375 * 60.00382 * 14 13 12 28 28 H 1.08999 * 109.47085 * 299.99823 * 14 13 12 29 29 H 1.08991 * 117.43340 * 4.63143 * 16 15 14 30 30 H 1.09001 * 117.42666 * 219.98106 * 16 15 14 31 31 H 1.08994 * 110.37760 * 79.95725 * 19 17 16 32 32 H 1.09003 * 110.37167 * 202.29889 * 19 17 16 33 33 H 1.09008 * 110.36844 * 159.34320 * 21 20 19 34 34 H 1.08994 * 110.37370 * 281.56334 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4211 0.0020 12 6 5.5607 -2.3707 -0.0001 13 7 6.0503 -3.7556 0.0007 14 6 7.5188 -3.7949 0.0003 15 6 7.9900 -5.2505 0.0005 16 6 8.6511 -5.8361 -1.2489 17 6 9.4864 -5.6354 0.0172 18 1 10.2917 -4.9008 0.0243 19 6 9.5632 -6.7998 1.0294 20 8 8.2329 -7.3621 1.0467 21 6 7.3399 -6.2278 1.0047 22 1 -0.4850 0.8400 -0.0004 23 1 3.8648 -0.3633 -0.0004 24 1 5.9247 -1.8557 0.8890 25 1 5.9234 -1.8579 -0.8910 26 1 5.6743 -4.2726 -0.7799 27 1 7.8960 -3.2903 0.8897 28 1 7.8954 -3.2916 -0.8902 29 1 8.8344 -5.1599 -2.0838 30 1 8.3911 -6.8588 -1.5220 31 1 10.2857 -7.5448 0.6967 32 1 9.8300 -6.4262 2.0180 33 1 6.3545 -6.5335 0.6529 34 1 7.2643 -5.7677 1.9899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689229896.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:42 Heat of formation + Delta-G solvation = -66.148520 kcal Electronic energy + Delta-G solvation = -16776.125598 eV Core-core repulsion = 13902.202830 eV Total energy + Delta-G solvation = -2873.922768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37225 -40.25683 -37.00535 -35.97246 -35.02759 -33.74126 -30.37352 -28.70120 -26.79317 -26.46975 -24.53835 -21.58808 -21.29929 -20.56914 -20.08703 -18.03382 -17.30921 -16.91553 -16.72301 -16.64854 -16.00542 -15.67872 -15.15302 -14.97927 -14.80444 -14.46398 -13.99723 -13.83022 -13.49757 -13.21324 -13.05656 -12.84916 -12.41350 -12.36736 -12.14524 -11.97227 -11.51140 -11.07899 -10.95178 -10.47990 -10.35194 -10.24990 -9.32894 -8.41239 -6.02461 1.30790 1.36161 1.45460 1.96040 2.23572 2.41306 2.78212 2.99149 3.15322 3.35423 3.65720 3.81706 3.88217 3.93522 4.16605 4.30808 4.44216 4.51717 4.52443 4.66173 4.68209 4.78431 4.86551 4.90360 4.96208 5.00320 5.21245 5.52525 5.78609 5.91081 6.05697 6.36070 6.59935 6.88183 7.39825 7.96854 8.76588 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.056442 B = 0.004205 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.962311 B = 6657.661192 C = 6926.441613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.063 3.937 13 N -0.686 5.686 14 C 0.114 3.886 15 C -0.178 4.178 16 C -0.135 4.135 17 C -0.176 4.176 18 H 0.148 0.852 19 C 0.062 3.938 20 O -0.402 6.402 21 C 0.089 3.911 22 H 0.279 0.721 23 H 0.390 0.610 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.344 0.656 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.397 -3.083 -0.704 24.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.235 3.765 11 O -0.500 6.500 12 C -0.069 4.069 13 N -0.318 5.318 14 C -0.014 4.014 15 C -0.179 4.179 16 C -0.172 4.172 17 C -0.195 4.195 18 H 0.165 0.835 19 C -0.014 4.014 20 O -0.321 6.321 21 C 0.013 3.987 22 H 0.089 0.911 23 H 0.226 0.774 24 H 0.133 0.867 25 H 0.097 0.903 26 H 0.163 0.837 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.688 -3.976 0.011 24.019 hybrid contribution -0.361 1.205 -0.831 1.508 sum 23.326 -2.771 -0.820 23.505 Atomic orbital electron populations 1.69812 1.08218 1.29285 1.50287 1.26149 0.96483 1.02814 0.96000 0.85335 0.79497 0.76530 0.79959 1.18067 1.20083 1.15327 1.19014 0.81599 0.94917 1.50450 0.92825 1.42025 1.05759 1.07640 1.67809 1.21035 0.91106 0.83273 0.81069 1.90552 1.71452 1.32870 1.55099 1.21622 0.89373 0.91753 1.04135 1.59996 1.08095 1.11999 1.51691 1.21242 0.86073 0.92236 1.01850 1.23077 0.96407 0.96754 1.01671 1.23054 1.00450 1.02348 0.91313 1.24222 0.94188 1.01757 0.99332 0.83486 1.23154 0.84804 0.95283 0.98129 1.89133 1.17572 1.29956 1.95462 1.22614 0.93384 0.85163 0.97561 0.91133 0.77396 0.86694 0.90275 0.83726 0.89576 0.92962 0.86323 0.89614 0.87476 0.90289 0.90336 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 3 Si 0.97 38.48 27.74 68.60 1.90 40.38 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 7 C -0.33 -19.47 10.16 84.04 0.85 -18.62 16 8 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 9 N -0.59 -27.73 5.09 -306.98 -1.56 -29.29 16 10 C 0.45 20.10 7.82 87.65 0.69 20.78 16 11 O -0.62 -34.37 15.78 -3.09 -0.05 -34.42 16 12 C 0.06 1.86 6.17 85.56 0.53 2.39 16 13 N -0.69 -19.62 5.78 -517.93 -3.00 -22.61 16 14 C 0.11 2.28 6.04 86.30 0.52 2.80 16 15 C -0.18 -3.58 2.73 -51.16 -0.14 -3.72 16 16 C -0.13 -2.32 9.65 30.60 0.30 -2.03 16 17 C -0.18 -2.64 7.17 -9.78 -0.07 -2.72 16 18 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 19 C 0.06 1.04 7.53 72.48 0.55 1.59 16 20 O -0.40 -10.09 11.31 -148.98 -1.69 -11.78 16 21 C 0.09 2.24 6.94 72.48 0.50 2.75 16 22 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 23 H 0.39 14.98 5.76 -92.70 -0.53 14.45 16 24 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.34 10.87 8.43 -89.69 -0.76 10.11 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 0.86 8.05 -2.39 -0.02 0.84 16 29 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.68 8.06 -2.39 -0.02 1.67 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.13 289.39 -0.13 -76.26 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.23 Total: 35.00 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 4.19 Total: 2.80 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.26 Total: -108.25 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -1.73 Total: -46.20 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.38 kcal Total: -76.13 -0.13 -76.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689229896.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.110 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds