Wall clock time and date at job start Mon Mar 30 2020 03:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48504 * 109.46688 * 269.99269 * 3 2 1 5 5 H 1.48489 * 109.47389 * 29.99611 * 3 2 1 6 6 H 1.48498 * 109.47099 * 149.99794 * 3 2 1 7 7 C 1.37874 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50702 * 110.53748 * 61.67760 * 10 9 7 12 12 O 1.20831 * 119.99500 * 118.83909 * 11 10 9 13 13 O 1.34222 * 120.00624 * 298.83798 * 11 10 9 14 14 C 1.54811 * 110.48943 * 299.06460 * 10 9 7 15 15 C 1.54994 * 102.09237 * 220.44053 * 14 10 9 16 16 O 1.44378 * 103.49005 * 37.02182 * 15 14 10 17 17 C 1.43738 * 106.97922 * 319.94010 * 16 15 14 18 18 H 1.08996 * 109.87771 * 267.09182 * 17 16 15 19 19 C 1.52991 * 109.88192 * 146.08646 * 17 16 15 20 20 C 1.53004 * 117.50241 * 134.37850 * 19 17 16 21 21 C 1.52995 * 117.50102 * 65.71695 * 19 17 16 22 22 H 0.96999 * 119.99817 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47144 * 59.99331 * 9 7 2 24 24 H 1.08999 * 109.47352 * 299.99660 * 9 7 2 25 25 H 0.96697 * 117.00824 * 179.97438 * 13 11 10 26 26 H 1.09002 * 110.90834 * 102.23752 * 14 10 9 27 27 H 1.09004 * 110.90694 * 338.64109 * 14 10 9 28 28 H 1.09008 * 110.61534 * 155.52330 * 15 14 10 29 29 H 1.08995 * 110.61958 * 278.36165 * 15 14 10 30 30 H 1.09007 * 115.55350 * 280.04645 * 19 17 16 31 31 H 1.09007 * 117.49466 * 359.97438 * 20 19 17 32 32 H 1.08990 * 117.50499 * 145.01984 * 20 19 17 33 33 H 1.08996 * 117.50373 * 214.98219 * 21 19 17 34 34 H 1.09005 * 117.49803 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 3.0978 -3.6288 1.2428 12 8 3.0694 -4.5538 2.0198 13 8 3.8885 -2.5719 1.4862 14 6 3.1329 -3.6161 -1.2670 15 6 3.2190 -5.1136 -1.6575 16 8 1.9034 -5.6194 -1.3446 17 6 1.5017 -5.0075 -0.1076 18 1 1.7745 -5.6500 0.7295 19 6 -0.0098 -4.7712 -0.1108 20 6 -0.7889 -5.1630 1.1465 21 6 -0.9174 -6.0028 -0.1269 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8903 25 1 4.4166 -2.5958 2.2959 26 1 4.1206 -3.2169 -1.0361 27 1 2.6549 -3.0353 -2.0558 28 1 3.4285 -5.2213 -2.7219 29 1 3.9793 -5.6218 -1.0646 30 1 -0.3470 -3.8905 -0.6576 31 1 -0.2244 -5.5895 1.9757 32 1 -1.6385 -4.5405 1.4266 33 1 -1.8516 -5.9325 -0.6839 34 1 -0.4375 -6.9815 -0.1356 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691813345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:02 Heat of formation + Delta-G solvation = -113.303005 kcal Electronic energy + Delta-G solvation = -18377.691160 eV Core-core repulsion = 15469.430869 eV Total energy + Delta-G solvation = -2908.260291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53355 -38.50473 -36.15837 -35.46496 -33.95594 -31.90649 -29.26416 -26.93627 -24.19201 -22.94236 -22.29739 -21.76748 -20.61875 -18.58160 -17.29603 -16.95843 -15.95706 -15.70006 -15.04327 -14.66209 -14.54428 -14.27654 -13.92119 -13.36893 -12.83306 -12.37460 -12.02410 -11.81156 -11.24538 -11.14225 -11.11304 -10.91410 -10.85459 -10.75882 -10.59058 -10.40229 -9.77290 -9.72845 -9.61325 -9.47835 -9.06441 -9.01402 -8.40138 -6.04592 -4.05504 2.85265 3.29687 3.36933 3.40510 3.67904 3.97908 4.42479 4.59980 5.01160 5.04861 5.30306 5.36546 5.41956 5.50054 5.55181 5.67178 5.95086 5.96805 6.00242 6.04800 6.08825 6.26508 6.31519 6.54071 6.55389 6.70415 6.80189 7.09607 7.26354 7.48811 7.53852 7.95030 8.28103 8.57386 9.02341 9.58570 11.06647 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.009632 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.060741 B = 2906.361843 C = 3316.576788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.044 3.956 10 C -0.075 4.075 11 C 0.510 3.490 12 O -0.544 6.544 13 O -0.484 6.484 14 C -0.127 4.127 15 C 0.039 3.961 16 O -0.369 6.369 17 C 0.115 3.885 18 H 0.082 0.918 19 C -0.148 4.148 20 C -0.171 4.171 21 C -0.176 4.176 22 H 0.260 0.740 23 H 0.041 0.959 24 H 0.027 0.973 25 H 0.391 0.609 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 -7.667 -0.731 8.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.007 3.993 10 C -0.076 4.076 11 C 0.354 3.646 12 O -0.435 6.435 13 O -0.291 6.291 14 C -0.165 4.165 15 C -0.038 4.038 16 O -0.288 6.288 17 C 0.058 3.942 18 H 0.100 0.900 19 C -0.166 4.166 20 C -0.208 4.208 21 C -0.213 4.213 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.247 0.753 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.494 -7.925 -1.009 8.719 hybrid contribution 0.912 1.192 0.782 1.692 sum 4.406 -6.733 -0.227 8.049 Atomic orbital electron populations 1.69955 1.06041 1.26686 1.50887 1.24975 0.94747 0.99189 0.95370 0.86592 0.79924 0.83459 0.78015 1.20793 1.21488 1.19771 1.21381 0.93815 0.90011 1.50213 0.90816 1.19305 0.92266 0.89037 0.98701 1.21979 0.96028 0.99448 0.90168 1.23201 0.76493 0.77842 0.87030 1.90595 1.65751 1.37984 1.49169 1.84849 1.54063 1.44151 1.46079 1.23122 1.00333 0.95971 0.97053 1.23629 0.85641 0.93666 1.00860 1.88846 1.32262 1.66942 1.40761 1.22366 0.92513 0.91902 0.87443 0.90022 1.22558 0.91439 0.99846 1.02734 1.22918 1.02734 1.03500 0.91659 1.22842 1.01324 0.95808 1.01353 0.93004 0.94119 0.95431 0.75310 0.90070 0.88364 0.89031 0.93047 0.85402 0.89070 0.88540 0.89094 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.38 7.60 -34.44 -0.26 -13.64 16 8 H 0.07 1.86 5.86 -52.49 -0.31 1.56 16 9 C 0.04 1.04 2.62 -27.88 -0.07 0.97 16 10 C -0.07 -1.51 0.64 -154.13 -0.10 -1.61 16 11 C 0.51 10.29 6.86 36.01 0.25 10.54 16 12 O -0.54 -11.53 16.02 -18.75 -0.30 -11.83 16 13 O -0.48 -8.89 10.71 -39.24 -0.42 -9.31 16 14 C -0.13 -2.26 5.45 -24.72 -0.13 -2.39 16 15 C 0.04 0.61 7.72 38.21 0.29 0.90 16 16 O -0.37 -6.79 11.17 -35.23 -0.39 -7.19 16 17 C 0.12 2.21 3.19 -26.16 -0.08 2.13 16 18 H 0.08 1.64 6.27 -51.93 -0.33 1.31 16 19 C -0.15 -2.75 4.13 -90.62 -0.37 -3.12 16 20 C -0.17 -2.86 10.19 -26.69 -0.27 -3.13 16 21 C -0.18 -2.76 10.24 -26.70 -0.27 -3.03 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.04 1.03 6.43 -51.93 -0.33 0.69 16 24 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 25 H 0.39 5.13 9.10 45.56 0.41 5.54 16 26 H 0.08 1.36 7.69 -51.93 -0.40 0.96 16 27 H 0.10 1.82 7.85 -51.93 -0.41 1.41 16 28 H 0.09 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.13 2.61 5.67 -51.93 -0.29 2.32 16 31 H 0.09 1.50 8.09 -51.93 -0.42 1.08 16 32 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 279.80 15.07 4.22 4.22 Total: -1.00 -30.39 279.80 -6.03 -36.42 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.72 Total: 7.54 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.13 Total: -10.91 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.74 Total: -24.86 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.11 Total: -28.32 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.39 -6.03 -36.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691813345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.881 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds