Wall clock time and date at job start Mon Mar 30 2020 03:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99754 * 2 1 4 4 H 1.48504 * 109.46688 * 269.99269 * 3 2 1 5 5 H 1.48489 * 109.47389 * 29.99611 * 3 2 1 6 6 H 1.48498 * 109.47099 * 149.99794 * 3 2 1 7 7 C 1.37874 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50702 * 110.53748 * 61.67760 * 10 9 7 12 12 O 1.20831 * 119.99500 * 118.83909 * 11 10 9 13 13 O 1.34222 * 120.00624 * 298.83798 * 11 10 9 14 14 C 1.54811 * 110.48943 * 299.06460 * 10 9 7 15 15 C 1.54994 * 102.09237 * 220.44053 * 14 10 9 16 16 O 1.44378 * 103.49005 * 37.02182 * 15 14 10 17 17 C 1.43738 * 106.97922 * 319.94010 * 16 15 14 18 18 H 1.08996 * 109.87771 * 267.09182 * 17 16 15 19 19 C 1.52991 * 109.88192 * 146.08646 * 17 16 15 20 20 C 1.53004 * 117.50241 * 134.37850 * 19 17 16 21 21 C 1.52995 * 117.50102 * 65.71695 * 19 17 16 22 22 H 0.96999 * 119.99817 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47144 * 59.99331 * 9 7 2 24 24 H 1.08999 * 109.47352 * 299.99660 * 9 7 2 25 25 H 0.96697 * 117.00824 * 179.97438 * 13 11 10 26 26 H 1.09002 * 110.90834 * 102.23752 * 14 10 9 27 27 H 1.09004 * 110.90694 * 338.64109 * 14 10 9 28 28 H 1.09008 * 110.61534 * 155.52330 * 15 14 10 29 29 H 1.08995 * 110.61958 * 278.36165 * 15 14 10 30 30 H 1.09007 * 115.55350 * 280.04645 * 19 17 16 31 31 H 1.09007 * 117.49466 * 359.97438 * 20 19 17 32 32 H 1.08990 * 117.50499 * 145.01984 * 20 19 17 33 33 H 1.08996 * 117.50373 * 214.98219 * 21 19 17 34 34 H 1.09005 * 117.49803 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 3.0978 -3.6288 1.2428 12 8 3.0694 -4.5538 2.0198 13 8 3.8885 -2.5719 1.4862 14 6 3.1329 -3.6161 -1.2670 15 6 3.2190 -5.1136 -1.6575 16 8 1.9034 -5.6194 -1.3446 17 6 1.5017 -5.0075 -0.1076 18 1 1.7745 -5.6500 0.7295 19 6 -0.0098 -4.7712 -0.1108 20 6 -0.7889 -5.1630 1.1465 21 6 -0.9174 -6.0028 -0.1269 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8903 25 1 4.4166 -2.5958 2.2959 26 1 4.1206 -3.2169 -1.0361 27 1 2.6549 -3.0353 -2.0558 28 1 3.4285 -5.2213 -2.7219 29 1 3.9793 -5.6218 -1.0646 30 1 -0.3470 -3.8905 -0.6576 31 1 -0.2244 -5.5895 1.9757 32 1 -1.6385 -4.5405 1.4266 33 1 -1.8516 -5.9325 -0.6839 34 1 -0.4375 -6.9815 -0.1356 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691813345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:01 Heat of formation + Delta-G solvation = -133.003181 kcal Electronic energy + Delta-G solvation = -18378.545424 eV Core-core repulsion = 15469.430869 eV Total energy + Delta-G solvation = -2909.114554 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.06896 -39.99617 -37.52215 -37.02063 -35.74923 -33.76071 -30.70790 -28.77691 -25.73577 -24.83080 -23.69211 -23.10047 -22.08570 -20.15850 -18.91921 -18.61844 -17.60135 -17.32345 -16.59893 -16.35680 -16.03090 -15.83264 -15.38875 -14.73935 -14.47026 -14.22763 -13.64054 -13.52772 -12.94430 -12.78953 -12.50828 -12.43303 -12.39267 -12.31627 -12.22612 -12.09839 -11.42827 -11.18745 -11.14155 -11.03703 -10.90841 -10.56181 -10.46226 -8.11602 -6.18014 1.25178 1.44771 1.46050 1.56378 2.21214 2.47007 2.61752 3.22535 3.23943 3.52582 3.63377 3.94853 4.03969 4.12488 4.18476 4.35151 4.47344 4.50235 4.53042 4.76165 4.82115 4.87854 4.96816 5.05371 5.20800 5.24436 5.29143 5.46358 5.57223 5.66398 5.87992 5.90630 6.26594 6.96175 7.13595 7.49605 9.00120 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.009632 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.060741 B = 2906.361843 C = 3316.576788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.060 3.940 10 C -0.081 4.081 11 C 0.512 3.488 12 O -0.556 6.556 13 O -0.488 6.488 14 C -0.125 4.125 15 C 0.041 3.959 16 O -0.379 6.379 17 C 0.123 3.877 18 H 0.076 0.924 19 C -0.176 4.176 20 C -0.172 4.172 21 C -0.150 4.150 22 H 0.259 0.741 23 H 0.020 0.980 24 H -0.005 1.005 25 H 0.415 0.585 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.449 -8.184 -1.041 9.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.555 4.555 8 H 0.100 0.900 9 C 0.023 3.977 10 C -0.082 4.082 11 C 0.357 3.643 12 O -0.448 6.448 13 O -0.298 6.298 14 C -0.163 4.163 15 C -0.035 4.035 16 O -0.298 6.298 17 C 0.066 3.934 18 H 0.093 0.907 19 C -0.194 4.194 20 C -0.209 4.209 21 C -0.187 4.187 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.014 0.986 25 H 0.274 0.726 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.964 -8.443 -1.311 9.882 hybrid contribution 0.482 1.346 0.894 1.687 sum 5.447 -7.097 -0.417 8.956 Atomic orbital electron populations 1.70093 1.07636 1.27325 1.52512 1.25803 0.95469 1.02738 0.95422 0.85600 0.78906 0.79269 0.78188 1.20164 1.21882 1.18546 1.21745 0.94329 0.90715 1.48731 0.89975 1.18977 0.92317 0.90238 0.96146 1.21919 0.95915 0.98578 0.91821 1.23082 0.76584 0.77982 0.86699 1.90587 1.66315 1.38552 1.49395 1.84757 1.54060 1.43298 1.47721 1.23112 1.00122 0.97730 0.95337 1.23823 0.84786 0.91783 1.03071 1.88828 1.33710 1.67011 1.40254 1.22193 0.92583 0.91028 0.87627 0.90676 1.22448 0.91903 1.00713 1.04335 1.22959 1.02404 1.03814 0.91729 1.22929 1.00946 0.94962 0.99832 0.93203 0.96215 0.98635 0.72552 0.88860 0.89612 0.85930 0.91579 0.88054 0.88892 0.88408 0.87414 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.52 -26.84 7.60 25.60 0.19 -26.64 16 8 H 0.08 4.05 5.86 -2.91 -0.02 4.04 16 9 C 0.06 2.95 2.62 29.85 0.08 3.03 16 10 C -0.08 -3.25 0.64 -51.94 -0.03 -3.29 16 11 C 0.51 20.15 6.86 71.24 0.49 20.64 16 12 O -0.56 -22.99 16.02 21.95 0.35 -22.64 16 13 O -0.49 -17.07 10.71 -51.34 -0.55 -17.62 16 14 C -0.13 -4.29 5.45 31.89 0.17 -4.11 16 15 C 0.04 1.20 7.72 72.66 0.56 1.76 16 16 O -0.38 -13.38 11.17 -148.98 -1.66 -15.04 16 17 C 0.12 4.68 3.19 30.96 0.10 4.78 16 18 H 0.08 2.96 6.27 -2.39 -0.01 2.95 16 19 C -0.18 -6.62 4.13 -10.80 -0.04 -6.66 16 20 C -0.17 -5.74 10.19 30.62 0.31 -5.43 16 21 C -0.15 -4.51 10.24 30.62 0.31 -4.20 16 22 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 23 H 0.02 1.05 6.43 -2.39 -0.02 1.03 16 24 H 0.00 -0.26 7.67 -2.39 -0.02 -0.27 16 25 H 0.41 9.95 9.10 -74.06 -0.67 9.27 16 26 H 0.09 2.93 7.69 -2.39 -0.02 2.91 16 27 H 0.09 3.13 7.85 -2.38 -0.02 3.11 16 28 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 4.35 5.67 -2.38 -0.01 4.34 16 31 H 0.09 3.04 8.09 -2.38 -0.02 3.03 16 32 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 Total: -1.00 -64.60 279.80 3.50 -61.10 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.44 Total: 23.22 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 2.60 Total: -19.51 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.25 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -1.86 Total: -55.30 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -64.60 3.50 -61.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691813345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.898 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds