Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48500 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47148 * 299.99582 * 3 2 1 6 6 H 1.48500 * 109.47212 * 59.99757 * 3 2 1 7 7 C 1.37871 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47071 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00029 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 16 16 C 1.35143 * 127.24759 * 89.70473 * 15 14 13 17 17 C 1.37804 * 114.75762 * 179.86854 * 16 15 14 18 18 N 1.30081 * 116.88611 * 0.44994 * 17 16 15 19 19 S 1.69606 * 107.14812 * 359.75574 * 18 17 16 20 20 H 0.97005 * 119.99618 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47339 * 60.00089 * 9 7 2 22 22 H 1.09003 * 109.46887 * 299.99757 * 9 7 2 23 23 H 1.09005 * 109.47127 * 59.99583 * 10 9 7 24 24 H 1.09004 * 109.47149 * 300.00087 * 10 9 7 25 25 H 1.08995 * 109.47319 * 59.99998 * 11 10 9 26 26 H 1.09003 * 109.47435 * 299.99322 * 11 10 9 27 27 H 1.00902 * 111.00190 * 56.03777 * 12 11 10 28 28 H 1.09002 * 109.47043 * 299.99792 * 13 12 11 29 29 H 1.09001 * 109.47354 * 59.99854 * 13 12 11 30 30 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 31 31 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 32 32 H 1.08004 * 122.62036 * 0.04476 * 16 15 14 33 33 H 1.08003 * 121.55648 * 180.21155 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 7 2.4348 -6.1036 0.0043 13 6 1.7345 -7.3950 0.0044 14 6 2.7594 -8.5309 0.0057 15 6 2.0410 -9.8557 0.0064 16 6 1.6467 -10.5729 -1.0690 17 6 1.0091 -11.7575 -0.7704 18 7 0.8541 -12.0407 0.4897 19 16 1.5435 -10.7698 1.3764 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5566 0.8903 23 1 2.8713 -3.6039 0.8923 24 1 2.8726 -3.6047 -0.8877 25 1 0.8539 -5.0454 -0.8877 26 1 0.8532 -5.0442 0.8923 27 1 3.0692 -6.0358 0.7861 28 1 1.1086 -7.4688 0.8937 29 1 1.1106 -7.4700 -0.8863 30 1 3.3850 -8.4569 -0.8839 31 1 3.3837 -8.4561 0.8960 32 1 1.8204 -10.2447 -2.0832 33 1 0.6512 -12.4180 -1.5464 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709895584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = 15.653570 kcal Electronic energy + Delta-G solvation = -13843.569872 eV Core-core repulsion = 11415.947180 eV Total energy + Delta-G solvation = -2427.622692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.09423 -36.88175 -34.28361 -32.88558 -31.08454 -28.78530 -26.17824 -24.49271 -22.62202 -22.01864 -20.24262 -19.94247 -17.97189 -16.34122 -16.02552 -15.80655 -14.78145 -14.49525 -14.25609 -14.15665 -13.83014 -13.32325 -12.80871 -12.46925 -12.29750 -11.80966 -11.54278 -11.44643 -11.01787 -10.82759 -10.70883 -10.59633 -10.49374 -9.72515 -9.70518 -9.33485 -9.04402 -8.99905 -8.34847 -8.27574 -5.99616 -4.01736 0.44088 1.23744 1.63825 2.22163 3.31452 3.38836 3.43266 4.04938 4.46081 4.58798 4.73202 4.90749 4.97891 5.09606 5.35886 5.36346 5.47383 5.62773 5.73221 5.75844 5.86188 5.93710 6.28905 6.32271 6.68603 6.72148 7.12052 7.24635 7.53998 7.68635 7.82971 8.00805 8.43886 9.05782 9.62416 11.11886 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.076457 B = 0.002968 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.128900 B = 9430.890283 C = 9474.463950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.691 5.691 13 C 0.064 3.936 14 C -0.047 4.047 15 C -0.153 4.153 16 C -0.211 4.211 17 C 0.092 3.908 18 N -0.467 5.467 19 S 0.247 5.753 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.338 0.662 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -21.542 -0.373 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.322 5.322 13 C -0.067 4.067 14 C -0.086 4.086 15 C -0.284 4.284 16 C -0.246 4.246 17 C -0.106 4.106 18 N -0.287 5.287 19 S 0.399 5.601 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.156 0.844 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.408 -22.222 0.971 22.503 hybrid contribution 0.250 1.376 -0.988 1.712 sum 3.658 -20.847 -0.017 21.165 Atomic orbital electron populations 1.69982 1.06072 1.26461 1.51101 1.25039 0.94856 0.99306 0.95388 0.86535 0.80137 0.83778 0.77556 1.19711 1.21008 1.21053 1.21294 0.93103 0.91036 1.50236 0.92592 1.19075 0.94027 0.91398 0.97143 1.21630 0.99200 0.92890 1.00786 1.22143 0.94066 0.90646 1.00072 1.60535 1.20612 1.01204 1.49853 1.21915 0.95023 0.88562 1.01169 1.20137 0.97115 0.86758 1.04625 1.25538 1.02666 1.01913 0.98270 1.21379 1.05497 0.96048 1.01656 1.22860 0.97164 0.96647 0.93923 1.76805 1.23285 1.20469 1.08148 1.84166 1.50618 1.10686 1.14655 0.93084 0.96560 0.96799 0.93593 0.92489 0.91385 0.95618 0.84420 0.95182 0.90645 0.88428 0.90106 0.82440 0.80026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.19 5.41 -26.73 -0.14 -2.33 16 11 C 0.06 1.00 5.69 -3.82 -0.02 0.98 16 12 N -0.69 -9.42 6.50 -113.78 -0.74 -10.16 16 13 C 0.06 0.72 5.67 -3.83 -0.02 0.70 16 14 C -0.05 -0.42 6.05 -27.89 -0.17 -0.59 16 15 C -0.15 -1.42 5.85 -35.41 -0.21 -1.63 16 16 C -0.21 -1.78 10.17 -40.84 -0.42 -2.19 16 17 C 0.09 0.79 11.27 -18.45 -0.21 0.58 16 18 N -0.47 -5.16 12.09 28.86 0.35 -4.81 16 19 S 0.25 2.48 23.72 -107.50 -2.55 -0.07 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.34 4.21 8.73 -39.29 -0.34 3.87 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.18 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -31.21 298.43 -9.42 -40.64 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.96 Total: -2.74 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -1.74 Total: -17.68 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.35 Total: -41.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.55 Total: -0.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.21 -9.42 -40.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709895584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.290 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds