Wall clock time and date at job start Mon Mar 30 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48500 * 109.46961 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47148 * 299.99582 * 3 2 1 6 6 H 1.48500 * 109.47212 * 59.99757 * 3 2 1 7 7 C 1.37871 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00427 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47153 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47071 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.46899 * 111.00029 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 16 16 C 1.35143 * 127.24759 * 89.70473 * 15 14 13 17 17 C 1.37804 * 114.75762 * 179.86854 * 16 15 14 18 18 N 1.30081 * 116.88611 * 0.44994 * 17 16 15 19 19 S 1.69606 * 107.14812 * 359.75574 * 18 17 16 20 20 H 0.97005 * 119.99618 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47339 * 60.00089 * 9 7 2 22 22 H 1.09003 * 109.46887 * 299.99757 * 9 7 2 23 23 H 1.09005 * 109.47127 * 59.99583 * 10 9 7 24 24 H 1.09004 * 109.47149 * 300.00087 * 10 9 7 25 25 H 1.08995 * 109.47319 * 59.99998 * 11 10 9 26 26 H 1.09003 * 109.47435 * 299.99322 * 11 10 9 27 27 H 1.00902 * 111.00190 * 56.03777 * 12 11 10 28 28 H 1.09002 * 109.47043 * 299.99792 * 13 12 11 29 29 H 1.09001 * 109.47354 * 59.99854 * 13 12 11 30 30 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 31 31 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 32 32 H 1.08004 * 122.62036 * 0.04476 * 16 15 14 33 33 H 1.08003 * 121.55648 * 180.21155 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9870 0.0025 12 7 2.4348 -6.1036 0.0043 13 6 1.7345 -7.3950 0.0044 14 6 2.7594 -8.5309 0.0057 15 6 2.0410 -9.8557 0.0064 16 6 1.6467 -10.5729 -1.0690 17 6 1.0091 -11.7575 -0.7704 18 7 0.8541 -12.0407 0.4897 19 16 1.5435 -10.7698 1.3764 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5566 0.8903 23 1 2.8713 -3.6039 0.8923 24 1 2.8726 -3.6047 -0.8877 25 1 0.8539 -5.0454 -0.8877 26 1 0.8532 -5.0442 0.8923 27 1 3.0692 -6.0358 0.7861 28 1 1.1086 -7.4688 0.8937 29 1 1.1106 -7.4700 -0.8863 30 1 3.3850 -8.4569 -0.8839 31 1 3.3837 -8.4561 0.8960 32 1 1.8204 -10.2447 -2.0832 33 1 0.6512 -12.4180 -1.5464 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709895584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:05 Heat of formation + Delta-G solvation = -4.431765 kcal Electronic energy + Delta-G solvation = -13844.440838 eV Core-core repulsion = 11415.947180 eV Total energy + Delta-G solvation = -2428.493657 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79104 -38.04842 -35.85724 -34.40123 -32.62116 -29.89830 -27.76666 -25.55055 -24.08357 -23.06570 -21.85140 -20.74424 -18.74666 -18.44023 -17.06201 -16.70249 -16.50206 -15.66160 -15.43222 -15.32318 -14.85000 -14.31459 -14.10404 -13.74019 -13.66411 -13.27186 -12.97613 -12.74352 -12.57346 -12.43998 -12.19930 -11.77522 -11.49384 -11.41862 -11.38010 -11.11128 -10.55364 -10.41719 -9.71666 -9.41213 -8.19818 -6.30774 -0.26161 0.52818 0.93494 1.41077 1.41220 1.54906 1.57324 2.41701 3.10309 3.13555 3.78666 3.98514 4.07885 4.26302 4.32558 4.36585 4.42182 4.61228 4.72865 4.77507 4.93471 4.99382 5.07919 5.08932 5.13666 5.26304 5.53261 5.66422 5.76061 5.86924 5.99897 6.27262 6.47523 6.86871 7.38739 8.92364 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.076457 B = 0.002968 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.128900 B = 9430.890283 C = 9474.463950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.093 4.093 11 C 0.071 3.929 12 N -0.689 5.689 13 C 0.066 3.934 14 C -0.037 4.037 15 C -0.157 4.157 16 C -0.208 4.208 17 C 0.095 3.905 18 N -0.499 5.499 19 S 0.221 5.779 20 H 0.263 0.737 21 H -0.009 1.009 22 H -0.010 1.010 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.022 0.978 27 H 0.347 0.653 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -21.872 -1.015 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.131 4.131 11 C -0.058 4.058 12 N -0.320 5.320 13 C -0.064 4.064 14 C -0.076 4.076 15 C -0.287 4.287 16 C -0.243 4.243 17 C -0.102 4.102 18 N -0.319 5.319 19 S 0.373 5.627 20 H 0.072 0.928 21 H 0.010 0.990 22 H 0.008 0.992 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.166 0.834 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.198 0.802 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.741 -22.574 0.339 23.069 hybrid contribution -0.195 1.426 -0.832 1.663 sum 4.546 -21.148 -0.494 21.637 Atomic orbital electron populations 1.70111 1.07838 1.27699 1.51900 1.26010 0.95792 1.03472 0.94776 0.85381 0.79121 0.78673 0.77766 1.18481 1.20371 1.20393 1.21746 0.93609 0.92388 1.50223 0.92109 1.18990 0.94491 0.93224 0.94727 1.21378 0.97996 0.92737 1.00954 1.21832 0.93995 0.90242 0.99702 1.60434 1.19986 1.01157 1.50428 1.21919 0.95540 0.88018 1.00901 1.20032 0.96442 0.85541 1.05609 1.25595 1.03017 1.02045 0.98073 1.21693 1.04463 0.95624 1.02493 1.23411 0.95957 0.96989 0.93863 1.76837 1.24529 1.21201 1.09311 1.84186 1.51509 1.11351 1.15634 0.92793 0.99046 0.99169 0.92906 0.92641 0.91967 0.95969 0.83411 0.95476 0.90935 0.87491 0.89119 0.80195 0.76968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.24 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.76 5.41 30.59 0.17 -3.59 16 11 C 0.07 2.37 5.69 86.30 0.49 2.86 16 12 N -0.69 -17.60 6.50 -513.89 -3.34 -20.94 16 13 C 0.07 1.38 5.67 86.30 0.49 1.87 16 14 C -0.04 -0.57 6.05 29.85 0.18 -0.39 16 15 C -0.16 -2.63 5.85 24.97 0.15 -2.48 16 16 C -0.21 -3.00 10.17 21.45 0.22 -2.78 16 17 C 0.10 1.45 11.27 84.85 0.96 2.40 16 18 N -0.50 -10.54 12.09 -62.61 -0.76 -11.29 16 19 S 0.22 4.30 23.72 -56.49 -1.34 2.96 16 20 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 24 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.35 7.94 8.73 -89.69 -0.78 7.16 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -66.95 298.43 0.67 -66.28 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.30 Total: 4.89 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.49 Total: -31.26 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.81 Total: -89.25 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.34 Total: 2.96 kcal Total: -66.95 0.67 -66.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709895584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.848 kcal (2) G-P(sol) polarization free energy of solvation -66.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds