Wall clock time and date at job start Mon Mar 30 2020 04:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48504 * 109.46858 * 269.99561 * 3 2 1 5 5 H 1.48493 * 109.47021 * 29.99550 * 3 2 1 6 6 H 1.48502 * 109.47226 * 149.99576 * 3 2 1 7 7 C 1.37884 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00281 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99290 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46676 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99997 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99616 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99924 * 180.02562 * 11 10 9 14 14 N 1.46900 * 109.47057 * 186.05840 * 13 11 10 15 15 C 1.48557 * 111.00085 * 176.48632 * 14 13 11 16 16 C 1.54379 * 104.59404 * 200.95855 * 15 14 13 17 17 C 1.54261 * 105.06426 * 23.85315 * 16 15 14 18 18 H 1.08993 * 110.32635 * 241.11021 * 17 16 15 19 19 C 1.50700 * 110.32626 * 118.99392 * 17 16 15 20 20 O 1.20764 * 119.99534 * 122.83177 * 19 17 16 21 21 C 1.48824 * 110.97359 * 61.06572 * 14 13 11 22 22 H 0.97001 * 120.00117 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47460 * 60.00023 * 9 7 2 24 24 H 1.08994 * 109.46875 * 299.98855 * 9 7 2 25 25 H 0.97001 * 119.99940 * 359.97438 * 10 9 7 26 26 H 1.09000 * 109.47318 * 66.05266 * 13 11 10 27 27 H 1.09002 * 109.46787 * 306.05577 * 13 11 10 28 28 H 1.08994 * 110.41497 * 82.17697 * 15 14 13 29 29 H 1.09002 * 110.40837 * 319.73193 * 15 14 13 30 30 H 1.08998 * 110.32566 * 264.95395 * 16 15 14 31 31 H 1.09007 * 110.32674 * 142.74625 * 16 15 14 32 32 H 1.08001 * 120.00202 * 302.82851 * 19 17 16 33 33 H 1.09001 * 110.45364 * 40.32178 * 21 14 13 34 34 H 1.08999 * 110.49396 * 277.80297 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1049 0.0011 13 6 2.7330 -6.0288 0.0016 14 7 2.0043 -7.2961 -0.1440 15 6 2.9439 -8.4434 -0.2323 16 6 2.1245 -9.5665 -0.9033 17 6 1.0151 -8.8383 -1.6898 18 1 0.0331 -9.1333 -1.3203 19 6 1.1322 -9.1405 -3.1615 20 8 0.1999 -9.6294 -3.7535 21 6 1.2565 -7.3357 -1.4301 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 3.1566 -3.4355 0.0002 26 1 3.2860 -6.0336 0.9409 27 1 3.4288 -5.9123 -0.8292 28 1 3.2646 -8.7496 0.7634 29 1 3.8057 -8.1825 -0.8467 30 1 1.6870 -10.2191 -0.1478 31 1 2.7548 -10.1412 -1.5821 32 1 2.0496 -8.9199 -3.6868 33 1 1.8544 -6.9026 -2.2320 34 1 0.3069 -6.8089 -1.3358 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719068229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:59 Heat of formation + Delta-G solvation = -95.085404 kcal Electronic energy + Delta-G solvation = -16798.767836 eV Core-core repulsion = 13923.590271 eV Total energy + Delta-G solvation = -2875.177565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09765 -40.24104 -38.78606 -36.10032 -34.36041 -33.57825 -30.20192 -29.71738 -27.54278 -24.84712 -23.99649 -22.30837 -21.32285 -21.20889 -18.90240 -17.73306 -17.43613 -17.11939 -16.95552 -16.50110 -16.10663 -15.81076 -15.34620 -14.89643 -14.80559 -14.38656 -14.11938 -13.78824 -13.66917 -13.17681 -12.91499 -12.72125 -12.49834 -12.33707 -12.23527 -12.14486 -11.79090 -11.48035 -10.79891 -10.65101 -10.61877 -9.81111 -9.40785 -8.28971 -6.45830 0.93034 1.43642 1.46048 1.57331 1.80907 2.29370 2.49682 3.00147 3.06195 3.45600 3.58439 3.71213 3.98125 4.05218 4.28688 4.32830 4.39250 4.52971 4.68106 4.77377 4.91806 5.05665 5.11679 5.11896 5.22066 5.24625 5.50049 5.69573 5.81200 5.85665 5.98633 6.36135 6.66081 6.96415 7.24341 7.55350 8.83298 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.043364 B = 0.004243 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.542343 B = 6598.268146 C = 6908.626819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.268 3.732 10 N -0.709 5.709 11 C 0.490 3.510 12 O -0.589 6.589 13 C 0.039 3.961 14 N -0.518 5.518 15 C 0.032 3.968 16 C -0.100 4.100 17 C -0.163 4.163 18 H 0.077 0.923 19 C 0.366 3.634 20 O -0.507 6.507 21 C 0.046 3.954 22 H 0.268 0.732 23 H -0.015 1.015 24 H -0.016 1.016 25 H 0.409 0.591 26 H 0.131 0.869 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.060 0.940 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.392 -16.477 -2.497 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.360 5.360 11 C 0.277 3.723 12 O -0.470 6.470 13 C -0.092 4.092 14 N -0.243 5.243 15 C -0.095 4.095 16 C -0.138 4.138 17 C -0.183 4.183 18 H 0.096 0.904 19 C 0.224 3.776 20 O -0.380 6.380 21 C -0.082 4.082 22 H 0.077 0.923 23 H 0.003 0.997 24 H 0.002 0.998 25 H 0.245 0.755 26 H 0.149 0.851 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.547 -16.810 -2.334 20.526 hybrid contribution 0.334 1.408 -0.450 1.515 sum 11.881 -15.402 -2.784 19.650 Atomic orbital electron populations 1.70145 1.08384 1.28544 1.50083 1.26087 0.95732 1.03996 0.93863 0.85152 0.78535 0.76907 0.78590 1.19603 1.21142 1.17710 1.21640 0.94376 0.90534 1.52754 0.89602 1.18493 0.88729 0.84496 0.93832 1.46180 1.11151 1.05489 1.73160 1.21468 0.90064 0.84924 0.75886 1.90640 1.19479 1.85286 1.51584 1.22191 0.93874 0.87105 1.05981 1.65244 1.23458 1.02305 1.33317 1.23338 0.94234 0.89318 1.02585 1.22230 0.95190 0.97295 0.99062 1.22866 1.02519 0.96349 0.96577 0.90442 1.26624 0.91193 0.70154 0.89632 1.90410 1.43488 1.33796 1.70337 1.23002 0.99728 0.94521 0.90947 0.92306 0.99734 0.99807 0.75518 0.85111 0.88632 0.88312 0.90687 0.90029 0.87667 0.84086 0.92214 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 41.90 29.54 68.60 2.03 43.92 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.63 5.43 85.63 0.46 15.09 16 10 N -0.71 -28.91 5.55 -466.79 -2.59 -31.50 16 11 C 0.49 18.84 7.48 87.66 0.66 19.50 16 12 O -0.59 -29.04 14.43 -3.01 -0.04 -29.08 16 13 C 0.04 0.94 5.39 85.56 0.46 1.40 16 14 N -0.52 -12.60 5.19 -885.32 -4.59 -17.19 16 15 C 0.03 0.44 6.49 86.45 0.56 1.00 16 16 C -0.10 -1.27 6.64 31.49 0.21 -1.06 16 17 C -0.16 -3.24 3.52 -10.64 -0.04 -3.28 16 18 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 19 C 0.37 6.62 10.14 71.24 0.72 7.35 16 20 O -0.51 -14.11 17.91 -1.46 -0.03 -14.14 16 21 C 0.05 1.19 5.12 86.40 0.44 1.63 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 23 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H 0.41 13.31 8.32 -92.71 -0.77 12.53 16 26 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.10 1.64 7.98 -2.39 -0.02 1.62 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 0.70 7.70 -2.38 -0.02 0.68 16 32 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.06 1.32 7.68 -2.39 -0.02 1.30 16 34 H 0.06 2.11 6.54 -2.39 -0.02 2.10 16 Total: -1.00 -79.10 291.13 -0.44 -79.53 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.33 Total: 12.09 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 4.18 Total: 12.60 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -6.90 Total: -104.92 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.07 Total: -43.22 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -79.10 -0.44 -79.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719068229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.554 kcal (2) G-P(sol) polarization free energy of solvation -79.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds