Wall clock time and date at job start Mon Mar 30 2020 03:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.51993 * 2 1 4 4 C 1.53315 * 109.50008 * 239.91848 * 2 1 3 5 5 C 1.53249 * 108.47778 * 186.08567 * 4 2 1 6 6 C 1.52706 * 117.84384 * 196.12556 * 5 4 2 7 7 C 1.52734 * 117.84164 * 265.16662 * 5 4 2 8 8 H 1.09001 * 117.50424 * 359.65945 * 7 5 4 9 9 C 1.50698 * 117.50758 * 144.68876 * 7 5 4 10 10 O 1.21206 * 120.00143 * 95.66344 * 9 7 5 11 11 O 1.34316 * 120.00126 * 275.66875 * 9 7 5 12 12 C 1.34918 * 117.00307 * 179.97438 * 11 9 7 13 13 H 1.07999 * 119.99696 * 0.02562 * 12 11 9 14 14 C 1.38750 * 120.00131 * 179.97438 * 12 11 9 15 15 N 1.31444 * 119.99970 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00044 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47310 * 90.00038 * 16 14 12 18 18 H 1.48500 * 109.47424 * 209.99781 * 16 14 12 19 19 H 1.48502 * 109.47254 * 330.00183 * 16 14 12 20 20 C 1.53250 * 114.68530 * 50.64561 * 5 4 2 21 21 C 1.53333 * 108.48012 * 309.35911 * 20 5 4 22 22 O 1.42875 * 109.49651 * 120.07885 * 2 1 3 23 23 H 1.08997 * 109.47195 * 299.91618 * 1 2 3 24 24 H 1.08996 * 109.46857 * 59.92314 * 1 2 3 25 25 H 1.09000 * 109.46767 * 179.91597 * 1 2 3 26 26 H 1.09000 * 109.63833 * 66.38673 * 4 2 1 27 27 H 1.09000 * 109.63406 * 305.77842 * 4 2 1 28 28 H 1.09001 * 117.50075 * 215.28071 * 6 5 4 29 29 H 1.09004 * 117.50475 * 0.32831 * 6 5 4 30 30 H 0.97002 * 119.99482 * 180.02562 * 15 14 12 31 31 H 1.08999 * 109.63537 * 69.05380 * 20 5 4 32 32 H 1.08998 * 109.63667 * 189.66205 * 20 5 4 33 33 H 1.08998 * 109.49790 * 173.90423 * 21 20 5 34 34 H 1.09002 * 109.49685 * 294.00501 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0418 -0.7244 -1.2506 5 6 3.5663 -0.8454 -1.1520 6 6 4.3387 -1.1843 -2.4250 7 6 4.4126 0.2264 -1.8360 8 1 3.8869 1.0212 -2.3652 9 6 5.6977 0.6335 -1.1622 10 8 6.7451 0.1232 -1.4961 11 8 5.6822 1.5619 -0.1917 12 6 6.8667 1.8802 0.3704 13 1 7.7713 1.3947 0.0351 14 6 6.9229 2.8319 1.3785 15 7 8.0768 3.1416 1.9264 16 14 5.3585 3.6731 1.9570 17 1 4.7585 2.8921 3.0684 18 1 5.6795 5.0430 2.4317 19 1 4.3938 3.7528 0.8308 20 6 4.0782 -1.4249 0.1711 21 6 3.4266 -0.6525 1.3244 22 8 2.0069 -0.6750 1.1655 23 1 -0.3633 0.5125 0.8907 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3633 -1.0277 -0.0015 26 1 1.7765 -0.1523 -2.1396 27 1 1.5983 -1.7186 -1.3052 28 1 5.2197 -1.8183 -2.3255 29 1 3.7643 -1.3177 -3.3418 30 1 8.1159 3.8067 2.6315 31 1 3.8088 -2.4789 0.2379 32 1 5.1615 -1.3166 0.2237 33 1 3.6942 -1.1197 2.2721 34 1 3.7774 0.3795 1.3150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759659641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:41 Heat of formation + Delta-G solvation = -110.704726 kcal Electronic energy + Delta-G solvation = -18076.979155 eV Core-core repulsion = 15168.831534 eV Total energy + Delta-G solvation = -2908.147621 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20338 -38.73450 -36.62196 -35.03374 -32.75493 -32.30854 -30.04915 -27.41404 -26.05609 -23.61967 -23.18991 -21.34496 -19.96550 -18.59756 -17.97100 -16.75321 -16.16618 -15.81481 -15.37037 -14.92663 -14.50278 -14.10543 -13.71271 -13.32124 -12.98732 -12.65434 -12.45603 -12.38675 -12.23899 -11.78042 -11.68533 -11.28378 -10.98460 -10.91279 -10.61031 -10.55768 -10.38904 -10.11711 -9.84912 -9.67571 -9.19866 -8.99022 -8.69470 -6.38909 -4.14396 3.06464 3.22023 3.28437 3.35388 3.78350 3.91623 4.10770 4.22662 4.68275 4.82170 4.94821 5.00331 5.07439 5.12937 5.31563 5.40569 5.53866 5.61994 5.72404 5.74980 5.81111 5.85232 5.87344 6.05548 6.10723 6.16861 6.25401 6.34143 6.37429 6.47764 7.44251 7.72211 8.02280 8.60700 8.99818 9.69122 10.69687 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.009711 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.026382 B = 2882.545994 C = 3629.455156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.062 0.938 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.139 4.139 7 C -0.140 4.140 8 H 0.126 0.874 9 C 0.439 3.561 10 O -0.538 6.538 11 O -0.247 6.247 12 C -0.382 4.382 13 H 0.109 0.891 14 C 0.068 3.932 15 N -0.874 5.874 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.260 1.260 20 C -0.119 4.119 21 C 0.062 3.938 22 O -0.383 6.383 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.279 0.721 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.837 -6.293 -4.255 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.080 0.920 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.176 4.176 7 C -0.159 4.159 8 H 0.144 0.856 9 C 0.285 3.715 10 O -0.433 6.433 11 O -0.155 6.155 12 C -0.457 4.457 13 H 0.126 0.874 14 C -0.136 4.136 15 N -0.513 5.513 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.184 1.184 20 C -0.156 4.156 21 C -0.015 4.015 22 O -0.303 6.303 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.573 -6.364 -4.036 16.406 hybrid contribution -0.127 0.690 0.060 0.704 sum -14.700 -5.675 -3.976 16.251 Atomic orbital electron populations 1.21757 0.93332 1.02617 1.02293 1.22107 0.94499 0.95618 0.85151 0.92039 1.21840 0.92183 1.01751 0.98640 1.21530 0.93399 1.01544 0.94553 1.23050 1.02200 0.96066 0.96282 1.21784 0.96032 0.94096 1.03993 0.85640 1.21859 0.89052 0.80076 0.80521 1.90599 1.33224 1.55272 1.64158 1.83522 1.36752 1.50497 1.44727 1.20646 0.84048 1.23357 1.17675 0.87378 1.24514 0.97887 0.95921 0.95260 1.69606 1.24271 1.32098 1.25350 0.86316 0.82806 0.78744 0.79763 1.19622 1.20702 1.18383 1.21821 1.01295 0.99889 0.92612 1.22628 0.79972 1.00945 0.97907 1.87800 1.21995 1.76957 1.43499 0.91907 0.91267 0.91969 0.90728 0.90409 0.87627 0.87960 0.91030 0.90625 0.90051 0.88710 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.57 37.16 0.36 -1.13 16 2 C 0.08 1.13 3.26 -26.57 -0.09 1.05 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.30 5.20 -26.44 -0.14 -1.44 16 5 C -0.11 -1.65 2.03 -154.54 -0.31 -1.97 16 6 C -0.14 -2.02 9.51 -26.85 -0.26 -2.28 16 7 C -0.14 -2.45 5.98 -91.88 -0.55 -3.00 16 8 H 0.13 1.93 8.14 -51.93 -0.42 1.51 16 9 C 0.44 10.41 5.91 36.00 0.21 10.62 16 10 O -0.54 -14.41 15.84 -19.05 -0.30 -14.71 16 11 O -0.25 -6.48 8.50 -20.71 -0.18 -6.66 16 12 C -0.38 -11.30 10.10 30.92 0.31 -10.98 16 13 H 0.11 3.54 7.09 -52.49 -0.37 3.17 16 14 C 0.07 1.94 5.49 -17.53 -0.10 1.85 16 15 N -0.87 -25.87 13.96 55.48 0.77 -25.10 16 16 Si 0.90 21.40 28.62 -169.99 -4.86 16.54 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.12 -1.92 5.59 -26.43 -0.15 -2.07 16 21 C 0.06 1.03 6.85 37.33 0.26 1.29 16 22 O -0.38 -6.05 10.33 -35.23 -0.36 -6.41 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.11 1.67 7.93 -51.93 -0.41 1.26 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.54 6.83 -51.93 -0.35 1.18 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 LS Contribution 287.63 15.07 4.33 4.33 Total: -1.00 -32.30 287.63 -5.96 -38.26 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.92 Total: 1.81 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.45 Total: -8.06 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.77 Total: -25.10 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.84 Total: -27.78 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.30 -5.96 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759659641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.444 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds