Wall clock time and date at job start Mon Mar 30 2020 03:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.51993 * 2 1 4 4 C 1.53315 * 109.50008 * 239.91848 * 2 1 3 5 5 C 1.53249 * 108.47778 * 186.08567 * 4 2 1 6 6 C 1.52706 * 117.84384 * 196.12556 * 5 4 2 7 7 C 1.52734 * 117.84164 * 265.16662 * 5 4 2 8 8 H 1.09001 * 117.50424 * 359.65945 * 7 5 4 9 9 C 1.50698 * 117.50758 * 144.68876 * 7 5 4 10 10 O 1.21206 * 120.00143 * 95.66344 * 9 7 5 11 11 O 1.34316 * 120.00126 * 275.66875 * 9 7 5 12 12 C 1.34918 * 117.00307 * 179.97438 * 11 9 7 13 13 H 1.07999 * 119.99696 * 0.02562 * 12 11 9 14 14 C 1.38750 * 120.00131 * 179.97438 * 12 11 9 15 15 N 1.31444 * 119.99970 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00044 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47310 * 90.00038 * 16 14 12 18 18 H 1.48500 * 109.47424 * 209.99781 * 16 14 12 19 19 H 1.48502 * 109.47254 * 330.00183 * 16 14 12 20 20 C 1.53250 * 114.68530 * 50.64561 * 5 4 2 21 21 C 1.53333 * 108.48012 * 309.35911 * 20 5 4 22 22 O 1.42875 * 109.49651 * 120.07885 * 2 1 3 23 23 H 1.08997 * 109.47195 * 299.91618 * 1 2 3 24 24 H 1.08996 * 109.46857 * 59.92314 * 1 2 3 25 25 H 1.09000 * 109.46767 * 179.91597 * 1 2 3 26 26 H 1.09000 * 109.63833 * 66.38673 * 4 2 1 27 27 H 1.09000 * 109.63406 * 305.77842 * 4 2 1 28 28 H 1.09001 * 117.50075 * 215.28071 * 6 5 4 29 29 H 1.09004 * 117.50475 * 0.32831 * 6 5 4 30 30 H 0.97002 * 119.99482 * 180.02562 * 15 14 12 31 31 H 1.08999 * 109.63537 * 69.05380 * 20 5 4 32 32 H 1.08998 * 109.63667 * 189.66205 * 20 5 4 33 33 H 1.08998 * 109.49790 * 173.90423 * 21 20 5 34 34 H 1.09002 * 109.49685 * 294.00501 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0418 -0.7244 -1.2506 5 6 3.5663 -0.8454 -1.1520 6 6 4.3387 -1.1843 -2.4250 7 6 4.4126 0.2264 -1.8360 8 1 3.8869 1.0212 -2.3652 9 6 5.6977 0.6335 -1.1622 10 8 6.7451 0.1232 -1.4961 11 8 5.6822 1.5619 -0.1917 12 6 6.8667 1.8802 0.3704 13 1 7.7713 1.3947 0.0351 14 6 6.9229 2.8319 1.3785 15 7 8.0768 3.1416 1.9264 16 14 5.3585 3.6731 1.9570 17 1 4.7585 2.8921 3.0684 18 1 5.6795 5.0430 2.4317 19 1 4.3938 3.7528 0.8308 20 6 4.0782 -1.4249 0.1711 21 6 3.4266 -0.6525 1.3244 22 8 2.0069 -0.6750 1.1655 23 1 -0.3633 0.5125 0.8907 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3633 -1.0277 -0.0015 26 1 1.7765 -0.1523 -2.1396 27 1 1.5983 -1.7186 -1.3052 28 1 5.2197 -1.8183 -2.3255 29 1 3.7643 -1.3177 -3.3418 30 1 8.1159 3.8067 2.6315 31 1 3.8088 -2.4789 0.2379 32 1 5.1615 -1.3166 0.2237 33 1 3.6942 -1.1197 2.2721 34 1 3.7774 0.3795 1.3150 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759659641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:41 Heat of formation + Delta-G solvation = -131.583418 kcal Electronic energy + Delta-G solvation = -18077.884523 eV Core-core repulsion = 15168.831534 eV Total energy + Delta-G solvation = -2909.052989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.74545 -40.34975 -38.09234 -36.94737 -34.53693 -33.77896 -31.32075 -28.62704 -27.83772 -25.24639 -24.51294 -22.38020 -21.54806 -20.19825 -20.06658 -18.51211 -17.33516 -17.26609 -17.05907 -16.36836 -16.03688 -15.90490 -15.22075 -14.67562 -14.42202 -14.34976 -14.03927 -13.46127 -13.30282 -13.23527 -13.00800 -12.78212 -12.48843 -12.37721 -12.14102 -12.05195 -11.90412 -11.74819 -11.37286 -11.24061 -10.89620 -10.86212 -10.21745 -8.59644 -6.45601 1.20247 1.27560 1.43969 1.49012 2.19287 2.27914 2.62843 2.79821 2.88273 3.52456 3.58039 3.74388 3.82515 3.97071 4.22421 4.34353 4.37944 4.44258 4.52649 4.58507 4.72126 4.79143 4.86333 4.88092 4.98286 5.02346 5.05258 5.17784 5.27645 5.37840 5.44997 5.85249 6.28406 6.48520 6.77969 7.56755 8.53618 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.009711 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.026382 B = 2882.545994 C = 3629.455156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.070 3.930 3 H 0.045 0.955 4 C -0.097 4.097 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.165 4.165 8 H 0.156 0.844 9 C 0.440 3.560 10 O -0.578 6.578 11 O -0.251 6.251 12 C -0.406 4.406 13 H 0.055 0.945 14 C 0.021 3.979 15 N -0.915 5.915 16 Si 0.972 3.028 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.252 1.252 20 C -0.121 4.121 21 C 0.066 3.934 22 O -0.389 6.389 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.290 0.710 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 -6.520 -5.202 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.013 3.987 3 H 0.063 0.937 4 C -0.134 4.134 5 C -0.099 4.099 6 C -0.154 4.154 7 C -0.184 4.184 8 H 0.173 0.827 9 C 0.288 3.712 10 O -0.474 6.474 11 O -0.160 6.160 12 C -0.482 4.482 13 H 0.073 0.927 14 C -0.179 4.179 15 N -0.555 5.555 16 Si 0.792 3.208 17 H -0.183 1.183 18 H -0.187 1.187 19 H -0.175 1.175 20 C -0.158 4.158 21 C -0.011 4.011 22 O -0.308 6.308 23 H 0.076 0.924 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.167 0.833 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.488 -6.603 -4.996 20.257 hybrid contribution 1.175 0.654 0.300 1.378 sum -17.312 -5.949 -4.696 18.899 Atomic orbital electron populations 1.21760 0.90623 1.03589 1.03369 1.22431 0.96590 0.94757 0.84960 0.93725 1.21901 0.89085 1.03363 0.99082 1.21709 0.95342 0.98948 0.93949 1.23232 1.01657 0.92651 0.97892 1.21976 0.93853 0.96610 1.05954 0.82666 1.23296 0.91064 0.77949 0.78885 1.90571 1.35708 1.56119 1.65007 1.83546 1.34752 1.51863 1.45878 1.20291 0.83784 1.24644 1.19496 0.92672 1.25474 1.01937 0.95959 0.94547 1.69700 1.26813 1.32930 1.26051 0.85232 0.77794 0.78128 0.79626 1.18274 1.18732 1.17527 1.21803 0.98800 1.01473 0.93738 1.22483 0.80947 0.99098 0.98598 1.87805 1.20744 1.77224 1.45059 0.92383 0.88736 0.91010 0.87707 0.88207 0.89592 0.83311 0.90046 0.88263 0.94019 0.88020 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.57 71.98 0.69 -1.57 16 2 C 0.07 1.66 3.26 30.70 0.10 1.76 16 3 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.10 -1.91 5.20 30.78 0.16 -1.75 16 5 C -0.10 -2.72 2.03 -52.20 -0.11 -2.83 16 6 C -0.12 -3.07 9.51 30.51 0.29 -2.78 16 7 C -0.17 -5.53 5.98 -11.61 -0.07 -5.60 16 8 H 0.16 4.27 8.14 -2.39 -0.02 4.25 16 9 C 0.44 21.54 5.91 71.24 0.42 21.96 16 10 O -0.58 -32.71 15.84 20.79 0.33 -32.38 16 11 O -0.25 -13.71 8.50 14.84 0.13 -13.58 16 12 C -0.41 -25.45 10.10 67.94 0.69 -24.76 16 13 H 0.06 3.94 7.09 -2.91 -0.02 3.92 16 14 C 0.02 1.24 5.49 84.87 0.47 1.71 16 15 N -0.92 -56.03 13.96 21.62 0.30 -55.72 16 16 Si 0.97 44.41 28.62 68.60 1.96 46.37 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.25 -11.07 7.11 99.48 0.71 -10.37 16 20 C -0.12 -3.83 5.59 30.79 0.17 -3.66 16 21 C 0.07 2.16 6.85 72.09 0.49 2.65 16 22 O -0.39 -11.46 10.33 -148.98 -1.54 -13.00 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 2.63 7.93 -2.39 -0.02 2.61 16 29 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.29 15.97 8.31 -92.71 -0.77 15.20 16 31 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.04 1.64 6.83 -2.39 -0.02 1.63 16 33 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 Total: -1.00 -75.57 287.63 5.57 -70.00 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.08 Total: 13.18 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 3.30 Total: -14.87 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.30 Total: -55.72 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -1.08 Total: -58.96 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.96 Total: 46.37 kcal Total: -75.57 5.57 -70.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759659641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.581 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds