Wall clock time and date at job start Mon Mar 30 2020 03:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.52259 * 2 1 4 4 C 1.53330 * 109.49492 * 239.92153 * 2 1 3 5 5 C 1.53246 * 108.65807 * 185.96933 * 4 2 1 6 6 C 1.52728 * 117.83993 * 265.35309 * 5 4 2 7 7 C 1.52717 * 117.87076 * 196.30091 * 5 4 2 8 8 H 1.08998 * 117.50442 * 0.32663 * 7 5 4 9 9 C 1.50698 * 117.50221 * 215.26536 * 7 5 4 10 10 O 1.21211 * 120.00429 * 359.97438 * 9 7 5 11 11 O 1.34318 * 119.99721 * 179.97438 * 9 7 5 12 12 C 1.34922 * 116.99960 * 179.97438 * 11 9 7 13 13 H 1.07995 * 119.99540 * 0.02562 * 12 11 9 14 14 C 1.38754 * 119.99691 * 179.97438 * 12 11 9 15 15 N 1.31438 * 120.00366 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99535 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47540 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.47250 * 120.00043 * 16 14 12 19 19 H 1.48499 * 109.47173 * 239.99781 * 16 14 12 20 20 C 1.53681 * 114.39125 * 50.59755 * 5 4 2 21 21 C 1.53327 * 108.59373 * 309.43117 * 20 5 4 22 22 O 1.42879 * 109.49615 * 120.07885 * 2 1 3 23 23 H 1.09002 * 109.47239 * 180.02562 * 1 2 3 24 24 H 1.09012 * 109.46753 * 300.07680 * 1 2 3 25 25 H 1.08997 * 109.47000 * 60.07543 * 1 2 3 26 26 H 1.09002 * 109.63463 * 305.77078 * 4 2 1 27 27 H 1.08999 * 109.63068 * 66.17003 * 4 2 1 28 28 H 1.08998 * 117.51175 * 359.62346 * 6 5 4 29 29 H 1.09004 * 117.50592 * 144.65370 * 6 5 4 30 30 H 0.96994 * 120.00447 * 180.02562 * 15 14 12 31 31 H 1.08999 * 109.57222 * 189.70707 * 20 5 4 32 32 H 1.09000 * 109.59469 * 69.17092 * 20 5 4 33 33 H 1.09003 * 109.49821 * 294.03940 * 21 20 5 34 34 H 1.08997 * 109.52495 * 173.95606 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7244 -1.2508 5 6 3.5665 -0.8452 -1.1580 6 6 4.4100 0.2289 -1.8418 7 6 4.3351 -1.1804 -2.4344 8 1 3.7580 -1.3115 -3.3497 9 6 5.5543 -2.0564 -2.3028 10 8 5.8914 -2.4662 -1.2131 11 8 6.2673 -2.3830 -3.3933 12 6 7.3474 -3.1696 -3.2059 13 1 7.6035 -3.5074 -2.2126 14 6 8.1282 -3.5455 -4.2895 15 7 7.8161 -3.1348 -5.4985 16 14 9.6230 -4.6352 -4.0302 17 1 9.7559 -4.9580 -2.5868 18 1 9.4602 -5.8916 -4.8050 19 1 10.8411 -3.9228 -4.4927 20 6 4.0776 -1.4254 0.1701 21 6 3.4267 -0.6531 1.3237 22 8 2.0068 -0.6750 1.1655 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5151 0.8894 25 1 -0.3633 0.5127 -0.8906 26 1 1.5982 -1.7186 -1.3054 27 1 1.7729 -0.1541 -2.1399 28 1 3.8822 1.0247 -2.3673 29 1 5.3408 0.5227 -1.3566 30 1 8.3617 -3.3978 -6.2560 31 1 5.1610 -1.3179 0.2228 32 1 3.8076 -2.4793 0.2366 33 1 3.7778 0.3788 1.3146 34 1 3.6942 -1.1201 2.2715 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759659642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:43 Heat of formation + Delta-G solvation = -129.840884 kcal Electronic energy + Delta-G solvation = -17463.327428 eV Core-core repulsion = 14554.350001 eV Total energy + Delta-G solvation = -2908.977427 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.62355 -40.28284 -38.06428 -36.64577 -34.32805 -33.71872 -31.34022 -28.41965 -27.73003 -25.22400 -24.49876 -22.84622 -21.29894 -20.06041 -19.79185 -18.54534 -17.27966 -16.86205 -16.72697 -16.41202 -16.21351 -15.86760 -15.23834 -14.78446 -14.44823 -13.99474 -13.68959 -13.64702 -13.20501 -13.05576 -12.97765 -12.72445 -12.43892 -12.23825 -12.16849 -12.00893 -11.96361 -11.66725 -11.29001 -10.94127 -10.81264 -10.71734 -10.12985 -8.56653 -6.36724 1.23769 1.31708 1.50432 1.54519 2.07383 2.55993 2.76108 2.87014 2.98458 3.52935 3.72296 3.85356 3.88093 4.02058 4.24244 4.37863 4.42129 4.54611 4.61851 4.66412 4.73496 4.76174 4.88351 4.92552 4.99311 5.05760 5.13500 5.17542 5.29135 5.36777 5.41913 5.81686 6.35678 6.66672 6.88489 7.77628 8.64705 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.053590 B = 0.005219 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.364995 B = 5364.210145 C = 5664.444877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.073 0.927 4 C -0.107 4.107 5 C -0.089 4.089 6 C -0.124 4.124 7 C -0.167 4.167 8 H 0.136 0.864 9 C 0.422 3.578 10 O -0.570 6.570 11 O -0.246 6.246 12 C -0.421 4.421 13 H 0.081 0.919 14 C -0.005 4.005 15 N -0.904 5.904 16 Si 1.019 2.981 17 H -0.265 1.265 18 H -0.259 1.259 19 H -0.258 1.258 20 C -0.112 4.112 21 C 0.071 3.929 22 O -0.399 6.399 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.279 0.721 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 8.308 7.971 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.029 3.971 3 H 0.091 0.909 4 C -0.144 4.144 5 C -0.089 4.089 6 C -0.161 4.161 7 C -0.186 4.186 8 H 0.153 0.847 9 C 0.270 3.730 10 O -0.468 6.468 11 O -0.154 6.154 12 C -0.497 4.497 13 H 0.099 0.901 14 C -0.205 4.205 15 N -0.542 5.542 16 Si 0.837 3.163 17 H -0.189 1.189 18 H -0.184 1.184 19 H -0.182 1.182 20 C -0.150 4.150 21 C -0.005 4.005 22 O -0.319 6.319 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.161 0.839 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.522 8.099 8.146 16.270 hybrid contribution 1.200 -0.802 -0.389 1.495 sum -10.322 7.297 7.757 14.831 Atomic orbital electron populations 1.21789 0.91384 1.02958 1.03662 1.22294 0.96023 0.95183 0.83636 0.90921 1.21934 0.89769 1.02344 1.00363 1.21711 0.94932 1.01109 0.91122 1.23277 1.01832 0.89899 1.01052 1.21717 0.95768 0.99684 1.01416 0.84654 1.23375 0.85461 0.81556 0.82574 1.90482 1.71572 1.56104 1.28636 1.83894 1.36937 1.58823 1.35776 1.21468 1.03264 1.28884 0.96094 0.90145 1.26559 1.01854 0.98608 0.93466 1.70082 1.40271 1.44166 0.99643 0.84561 0.75447 0.77260 0.79015 1.18921 1.18392 1.18244 1.21933 1.00956 0.98971 0.93107 1.22658 0.80217 0.99823 0.97836 1.87823 1.21801 1.77691 1.44547 0.92503 0.91337 0.88886 0.91380 0.88020 0.83901 0.89223 0.91172 0.90932 0.93450 0.91774 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.57 71.98 0.69 -1.50 16 2 C 0.09 1.77 3.26 30.70 0.10 1.87 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -2.46 5.19 30.79 0.16 -2.30 16 5 C -0.09 -2.70 2.04 -52.05 -0.11 -2.81 16 6 C -0.12 -3.58 9.64 30.52 0.29 -3.28 16 7 C -0.17 -6.32 6.04 -11.61 -0.07 -6.39 16 8 H 0.14 4.71 8.14 -2.39 -0.02 4.70 16 9 C 0.42 21.98 7.67 71.24 0.55 22.53 16 10 O -0.57 -31.37 12.42 20.77 0.26 -31.11 16 11 O -0.25 -15.05 9.75 14.78 0.14 -14.91 16 12 C -0.42 -26.31 9.65 67.94 0.66 -25.65 16 13 H 0.08 5.09 6.86 -2.91 -0.02 5.07 16 14 C 0.00 -0.29 5.49 84.88 0.47 0.18 16 15 N -0.90 -54.54 13.67 21.62 0.30 -54.24 16 16 Si 1.02 44.28 29.55 68.60 2.03 46.31 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 C -0.11 -3.79 4.37 30.93 0.14 -3.65 16 21 C 0.07 1.85 6.85 72.09 0.49 2.35 16 22 O -0.40 -10.45 10.33 -148.98 -1.54 -11.99 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.10 1.81 8.08 -2.39 -0.02 1.80 16 28 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 30 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.07 2.86 6.10 -2.39 -0.01 2.84 16 32 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -74.46 285.67 5.63 -68.83 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.08 Total: 15.79 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 3.36 Total: -18.68 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.30 Total: -54.24 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -1.14 Total: -58.01 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -74.46 5.63 -68.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759659642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.015 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds