Wall clock time and date at job start Mon Mar 30 2020 03:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20760 * 120.00107 * 2 1 4 4 C 1.50697 * 119.99930 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47381 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.47140 * 179.97438 * 5 4 2 7 7 O 1.20824 * 120.00159 * 0.02562 * 6 5 4 8 8 O 1.34233 * 119.99694 * 180.02562 * 6 5 4 9 9 C 1.45197 * 116.99870 * 185.11209 * 8 6 5 10 10 C 1.50694 * 112.85395 * 296.95060 * 9 8 6 11 11 H 1.08004 * 120.00062 * 115.13040 * 10 9 8 12 12 C 1.37876 * 120.00010 * 295.40546 * 10 9 8 13 13 N 1.31514 * 119.99717 * 4.94672 * 12 10 9 14 14 Si 1.86795 * 120.00204 * 184.94381 * 12 10 9 15 15 H 1.48500 * 109.47035 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47423 * 120.00208 * 14 12 10 17 17 H 1.48503 * 109.47282 * 240.00150 * 14 12 10 18 18 C 1.53790 * 113.60997 * 68.14645 * 9 8 6 19 19 C 1.53959 * 87.02040 * 89.22709 * 18 9 8 20 20 C 1.53784 * 113.61257 * 165.74817 * 9 8 6 21 21 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46661 * 300.00388 * 1 2 3 23 23 H 1.08997 * 109.47388 * 59.99334 * 1 2 3 24 24 H 1.09004 * 109.47693 * 59.99478 * 4 2 1 25 25 H 1.09003 * 109.46803 * 299.99631 * 4 2 1 26 26 H 1.09009 * 109.46866 * 59.99883 * 5 4 2 27 27 H 1.08994 * 109.47049 * 300.00440 * 5 4 2 28 28 H 0.97005 * 119.99699 * 185.00000 * 13 12 10 29 29 H 1.08997 * 113.61029 * 203.75013 * 18 9 8 30 30 H 1.08997 * 113.61306 * 334.65120 * 18 9 8 31 31 H 1.08998 * 113.53460 * 270.81382 * 19 18 9 32 32 H 1.08995 * 113.73992 * 139.93631 * 19 18 9 33 33 H 1.09002 * 113.61224 * 25.35559 * 20 9 8 34 34 H 1.09001 * 113.61223 * 156.16931 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5182 -2.3308 -0.0011 7 8 3.9140 -3.3771 -0.0011 8 8 5.8605 -2.3308 -0.0009 9 6 6.5197 -3.6193 -0.1162 10 6 6.2245 -4.5336 1.0448 11 1 5.6747 -5.4494 0.8848 12 6 6.6514 -4.1984 2.3122 13 7 7.2300 -3.0367 2.5253 14 14 6.4079 -5.3940 3.7266 15 1 5.7380 -6.6216 3.2272 16 1 7.7279 -5.7516 4.3054 17 1 5.5648 -4.7596 4.7715 18 6 6.3320 -4.2866 -1.4890 19 6 7.6018 -3.5395 -1.9360 20 6 8.0162 -3.5176 -0.4552 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.9971 -1.8764 -0.8908 25 1 1.9972 -1.8770 0.8892 26 1 4.0284 -0.4542 0.8890 27 1 4.0277 -0.4538 -0.8910 28 1 7.5954 -2.8301 3.3998 29 1 6.4478 -5.3702 -1.4672 30 1 5.4298 -3.9667 -2.0103 31 1 7.4025 -2.5504 -2.3483 32 1 8.2628 -4.1353 -2.5655 33 1 8.4716 -2.5777 -0.1431 34 1 8.5936 -4.3899 -0.1490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788130785.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:39 Heat of formation + Delta-G solvation = -111.034345 kcal Electronic energy + Delta-G solvation = -17582.763686 eV Core-core repulsion = 14674.601771 eV Total energy + Delta-G solvation = -2908.161914 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68328 -39.09292 -37.04953 -34.06104 -32.65639 -32.31688 -30.20633 -26.58161 -25.20168 -24.55307 -22.48364 -20.19779 -19.29735 -18.15379 -17.14266 -16.13760 -15.81847 -15.17396 -14.85973 -14.66224 -14.56474 -14.43921 -13.92428 -13.27403 -12.88264 -12.41388 -12.10033 -11.98408 -11.67982 -11.46080 -11.31135 -11.09624 -10.94371 -10.84167 -10.43300 -10.10062 -9.98360 -9.92839 -9.60529 -9.25641 -8.77201 -8.49688 -8.34879 -6.06312 -4.16984 1.98900 3.26084 3.35209 3.40866 3.49312 3.75582 4.36779 4.39591 4.90956 5.13635 5.19569 5.24974 5.40852 5.49659 5.64487 5.71828 5.79664 5.85921 5.92231 6.12793 6.20984 6.25294 6.43440 6.46526 6.77024 6.82625 7.18692 7.26237 7.51235 7.55431 7.82461 7.94751 8.35992 8.85672 9.22155 9.52508 10.98486 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.022258 B = 0.007572 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.699045 B = 3696.748046 C = 4413.506055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.355 3.645 3 O -0.463 6.463 4 C -0.159 4.159 5 C -0.111 4.111 6 C 0.461 3.539 7 O -0.513 6.513 8 O -0.335 6.335 9 C 0.233 3.767 10 C -0.516 4.516 11 H 0.066 0.934 12 C 0.073 3.927 13 N -0.866 5.866 14 Si 0.890 3.110 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.284 1.284 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.097 4.097 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.261 0.739 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 3.464 -5.481 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.232 3.768 3 O -0.337 6.337 4 C -0.196 4.196 5 C -0.149 4.149 6 C 0.303 3.697 7 O -0.402 6.402 8 O -0.251 6.251 9 C 0.199 3.801 10 C -0.554 4.554 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.502 5.502 14 Si 0.718 3.282 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.190 4.190 19 C -0.190 4.190 20 C -0.135 4.135 21 H 0.102 0.898 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.124 0.876 25 H 0.126 0.874 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.747 3.821 -5.325 10.148 hybrid contribution -0.198 -0.757 0.945 1.227 sum -7.945 3.064 -4.380 9.576 Atomic orbital electron populations 1.22253 0.94569 1.04726 1.04492 1.24702 0.91954 0.90297 0.69874 1.90412 1.71981 1.35293 1.36006 1.21950 0.94615 0.96913 1.06114 1.21116 0.92867 0.95195 1.05684 1.22862 0.82934 0.90480 0.73415 1.90555 1.69893 1.34072 1.45683 1.86407 1.18732 1.38883 1.81070 1.20614 0.89353 0.78468 0.91691 1.21265 1.36729 1.05762 0.91624 0.91609 1.25077 0.94799 0.94713 0.98629 1.70076 1.37013 1.20045 1.23110 0.86563 0.77899 0.81507 0.82262 1.19529 1.20804 1.21016 1.23477 0.96281 1.00102 0.99120 1.23025 0.98398 0.99656 0.97909 1.22733 0.96883 1.01684 0.92168 0.89843 0.89170 0.89213 0.87649 0.87383 0.88188 0.88646 0.92942 0.90096 0.93210 0.91363 0.92887 0.91880 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 10.33 36.01 0.37 -1.34 16 2 C 0.36 4.46 7.27 -29.04 -0.21 4.25 16 3 O -0.46 -7.42 16.72 6.00 0.10 -7.32 16 4 C -0.16 -2.21 4.84 -27.89 -0.13 -2.35 16 5 C -0.11 -1.94 5.10 -27.88 -0.14 -2.08 16 6 C 0.46 10.50 7.34 36.01 0.26 10.77 16 7 O -0.51 -12.61 14.20 -18.75 -0.27 -12.88 16 8 O -0.34 -8.51 9.83 -39.27 -0.39 -8.90 16 9 C 0.23 5.91 0.33 -90.96 -0.03 5.87 16 10 C -0.52 -14.41 7.16 -34.44 -0.25 -14.66 16 11 H 0.07 1.89 7.82 -52.48 -0.41 1.48 16 12 C 0.07 2.03 5.38 -17.82 -0.10 1.93 16 13 N -0.87 -24.73 12.79 55.43 0.71 -24.02 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.15 -3.35 6.97 -25.82 -0.18 -3.53 16 19 C -0.15 -2.99 8.03 -25.82 -0.21 -3.20 16 20 C -0.10 -2.23 7.08 -25.92 -0.18 -2.41 16 21 H 0.08 0.57 8.00 -51.93 -0.42 0.15 16 22 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 25 H 0.11 1.52 8.10 -51.93 -0.42 1.10 16 26 H 0.10 1.81 8.10 -51.92 -0.42 1.39 16 27 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 28 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 29 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 30 H 0.05 1.08 7.55 -51.93 -0.39 0.69 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.88 8.09 -51.93 -0.42 1.46 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -32.27 295.22 -6.20 -38.47 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.99 Total: 0.46 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.80 Total: -6.74 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.71 Total: -24.02 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.55 Total: -29.10 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.27 -6.20 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788130785.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.561 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds