Wall clock time and date at job start Mon Mar 30 2020 03:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20760 * 120.00107 * 2 1 4 4 C 1.50697 * 119.99930 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47381 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.47140 * 179.97438 * 5 4 2 7 7 O 1.20824 * 120.00159 * 0.02562 * 6 5 4 8 8 O 1.34233 * 119.99694 * 180.02562 * 6 5 4 9 9 C 1.45197 * 116.99870 * 185.11209 * 8 6 5 10 10 C 1.50694 * 112.85395 * 296.95060 * 9 8 6 11 11 H 1.08004 * 120.00062 * 115.13040 * 10 9 8 12 12 C 1.37876 * 120.00010 * 295.40546 * 10 9 8 13 13 N 1.31514 * 119.99717 * 4.94672 * 12 10 9 14 14 Si 1.86795 * 120.00204 * 184.94381 * 12 10 9 15 15 H 1.48500 * 109.47035 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47423 * 120.00208 * 14 12 10 17 17 H 1.48503 * 109.47282 * 240.00150 * 14 12 10 18 18 C 1.53790 * 113.60997 * 68.14645 * 9 8 6 19 19 C 1.53959 * 87.02040 * 89.22709 * 18 9 8 20 20 C 1.53784 * 113.61257 * 165.74817 * 9 8 6 21 21 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46661 * 300.00388 * 1 2 3 23 23 H 1.08997 * 109.47388 * 59.99334 * 1 2 3 24 24 H 1.09004 * 109.47693 * 59.99478 * 4 2 1 25 25 H 1.09003 * 109.46803 * 299.99631 * 4 2 1 26 26 H 1.09009 * 109.46866 * 59.99883 * 5 4 2 27 27 H 1.08994 * 109.47049 * 300.00440 * 5 4 2 28 28 H 0.97005 * 119.99699 * 185.00000 * 13 12 10 29 29 H 1.08997 * 113.61029 * 203.75013 * 18 9 8 30 30 H 1.08997 * 113.61306 * 334.65120 * 18 9 8 31 31 H 1.08998 * 113.53460 * 270.81382 * 19 18 9 32 32 H 1.08995 * 113.73992 * 139.93631 * 19 18 9 33 33 H 1.09002 * 113.61224 * 25.35559 * 20 9 8 34 34 H 1.09001 * 113.61223 * 156.16931 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5182 -2.3308 -0.0011 7 8 3.9140 -3.3771 -0.0011 8 8 5.8605 -2.3308 -0.0009 9 6 6.5197 -3.6193 -0.1162 10 6 6.2245 -4.5336 1.0448 11 1 5.6747 -5.4494 0.8848 12 6 6.6514 -4.1984 2.3122 13 7 7.2300 -3.0367 2.5253 14 14 6.4079 -5.3940 3.7266 15 1 5.7380 -6.6216 3.2272 16 1 7.7279 -5.7516 4.3054 17 1 5.5648 -4.7596 4.7715 18 6 6.3320 -4.2866 -1.4890 19 6 7.6018 -3.5395 -1.9360 20 6 8.0162 -3.5176 -0.4552 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.9971 -1.8764 -0.8908 25 1 1.9972 -1.8770 0.8892 26 1 4.0284 -0.4542 0.8890 27 1 4.0277 -0.4538 -0.8910 28 1 7.5954 -2.8301 3.3998 29 1 6.4478 -5.3702 -1.4672 30 1 5.4298 -3.9667 -2.0103 31 1 7.4025 -2.5504 -2.3483 32 1 8.2628 -4.1353 -2.5655 33 1 8.4716 -2.5777 -0.1431 34 1 8.5936 -4.3899 -0.1490 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788130785.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:38 Heat of formation + Delta-G solvation = -129.998511 kcal Electronic energy + Delta-G solvation = -17583.586034 eV Core-core repulsion = 14674.601771 eV Total energy + Delta-G solvation = -2908.984262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.31308 -40.41040 -38.82228 -35.92917 -34.43754 -33.96564 -31.11367 -28.54730 -26.62476 -26.33019 -24.29072 -21.81784 -20.42721 -19.99717 -19.04929 -17.67550 -17.24294 -16.83131 -16.72190 -16.13702 -15.96798 -15.83623 -15.47401 -15.03256 -14.24185 -13.87986 -13.46744 -13.27319 -13.07071 -12.99746 -12.94776 -12.80481 -12.78851 -12.30316 -12.21824 -11.98205 -11.82800 -11.67800 -11.09893 -10.78945 -10.66099 -10.47037 -10.28414 -8.16878 -6.34032 0.99876 1.33587 1.36881 1.48511 1.68835 2.20636 2.37540 3.10022 3.29543 3.71433 3.95334 3.97306 4.08083 4.15958 4.30146 4.39880 4.55874 4.64504 4.70396 4.77495 4.85217 4.87226 5.00394 5.04139 5.08333 5.20366 5.34884 5.51090 5.64788 5.74540 5.98616 6.43608 6.55586 6.69933 7.30416 7.43568 8.87108 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.022258 B = 0.007572 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.699045 B = 3696.748046 C = 4413.506055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.365 3.635 3 O -0.503 6.503 4 C -0.157 4.157 5 C -0.102 4.102 6 C 0.451 3.549 7 O -0.535 6.535 8 O -0.353 6.353 9 C 0.206 3.794 10 C -0.532 4.532 11 H 0.047 0.953 12 C 0.029 3.971 13 N -0.892 5.892 14 Si 0.947 3.053 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.284 1.284 18 C -0.148 4.148 19 C -0.126 4.126 20 C -0.099 4.099 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.120 0.880 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.263 0.737 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 3.394 -6.123 11.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.244 3.756 3 O -0.380 6.380 4 C -0.194 4.194 5 C -0.140 4.140 6 C 0.295 3.705 7 O -0.426 6.426 8 O -0.269 6.269 9 C 0.172 3.828 10 C -0.570 4.570 11 H 0.066 0.934 12 C -0.173 4.173 13 N -0.530 5.530 14 Si 0.773 3.227 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.210 1.210 18 C -0.185 4.185 19 C -0.163 4.163 20 C -0.137 4.137 21 H 0.122 0.878 22 H 0.120 0.880 23 H 0.124 0.876 24 H 0.138 0.862 25 H 0.125 0.875 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.798 3.742 -5.974 11.274 hybrid contribution 0.096 -0.752 1.137 1.366 sum -8.702 2.990 -4.838 10.396 Atomic orbital electron populations 1.22247 0.90610 1.06553 1.05720 1.25025 0.93811 0.88651 0.68113 1.90414 1.73136 1.36226 1.38188 1.22013 0.92157 0.98389 1.06837 1.21168 0.94697 0.92251 1.05906 1.23818 0.82280 0.92062 0.72337 1.90524 1.69959 1.35432 1.46694 1.86385 1.20310 1.38743 1.81461 1.20899 0.90842 0.78616 0.92488 1.21433 1.36611 1.05781 0.93134 0.93446 1.25738 0.94646 0.96183 1.00744 1.70162 1.37908 1.21277 1.23667 0.85679 0.78224 0.79468 0.79361 1.19558 1.19486 1.21007 1.23412 0.97596 1.00248 0.97284 1.22885 0.96992 1.00369 0.96051 1.22703 0.95430 1.00644 0.94940 0.87832 0.88041 0.87569 0.86208 0.87471 0.88995 0.87194 0.92835 0.89927 0.93293 0.90340 0.89458 0.93446 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 10.33 71.24 0.74 -1.93 16 2 C 0.36 8.50 7.27 29.10 0.21 8.71 16 3 O -0.50 -15.62 16.72 -1.45 -0.02 -15.64 16 4 C -0.16 -4.17 4.84 29.85 0.14 -4.03 16 5 C -0.10 -3.57 5.10 29.85 0.15 -3.42 16 6 C 0.45 20.70 7.34 71.24 0.52 21.22 16 7 O -0.54 -26.54 14.20 21.97 0.31 -26.22 16 8 O -0.35 -18.15 9.83 -51.45 -0.51 -18.65 16 9 C 0.21 10.51 0.33 -11.01 0.00 10.51 16 10 C -0.53 -30.14 7.16 25.60 0.18 -29.96 16 11 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 12 C 0.03 1.64 5.38 84.65 0.46 2.10 16 13 N -0.89 -51.69 12.79 21.45 0.27 -51.41 16 14 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 C -0.15 -6.39 6.97 31.18 0.22 -6.17 16 19 C -0.13 -4.69 8.03 31.18 0.25 -4.44 16 20 C -0.10 -4.56 7.08 31.12 0.22 -4.34 16 21 H 0.10 1.03 8.00 -2.39 -0.02 1.01 16 22 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.12 2.85 8.10 -2.38 -0.02 2.83 16 25 H 0.11 2.90 8.10 -2.39 -0.02 2.88 16 26 H 0.09 3.36 8.10 -2.38 -0.02 3.34 16 27 H 0.11 3.48 8.10 -2.39 -0.02 3.46 16 28 H 0.26 14.41 8.32 -92.70 -0.77 13.64 16 29 H 0.08 3.48 8.09 -2.39 -0.02 3.46 16 30 H 0.05 2.08 7.55 -2.39 -0.02 2.07 16 31 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.08 3.57 8.09 -2.39 -0.02 3.56 16 Total: -1.00 -70.11 295.22 6.25 -63.86 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.08 Total: 13.31 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 3.09 Total: -11.73 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.27 Total: -51.41 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.22 Total: -60.52 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -70.11 6.25 -63.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788130785.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.137 kcal (2) G-P(sol) polarization free energy of solvation -70.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds