Wall clock time and date at job start Mon Mar 30 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48499 * 109.47472 * 239.99765 * 3 2 1 5 5 H 1.48496 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46957 * 119.99927 * 3 2 1 7 7 C 1.37878 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99771 * 0.02562 * 7 2 1 10 10 O 1.42909 * 109.46797 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99746 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47204 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.47069 * 64.99497 * 12 11 10 14 14 C 1.34805 * 117.00060 * 179.97438 * 13 12 11 15 15 O 1.21531 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.46952 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.33086 * 120.00092 * 180.02562 * 16 14 13 18 18 C 1.50690 * 120.00313 * 180.02562 * 17 16 14 19 19 C 1.53000 * 117.50063 * 240.00268 * 18 17 16 20 20 C 1.53002 * 60.02940 * 252.49714 * 19 18 17 21 21 H 0.97000 * 120.00411 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47737 * 59.99715 * 9 7 2 23 23 H 1.09003 * 109.47038 * 299.99499 * 9 7 2 24 24 H 1.08997 * 109.47096 * 59.99527 * 11 10 9 25 25 H 1.09002 * 109.46620 * 299.99730 * 11 10 9 26 26 H 1.08997 * 109.47236 * 304.99963 * 12 11 10 27 27 H 1.09002 * 109.47537 * 184.99533 * 12 11 10 28 28 H 1.08001 * 119.99918 * 0.02562 * 16 14 13 29 29 H 1.08001 * 119.99301 * 0.02562 * 17 16 14 30 30 H 1.09007 * 115.55011 * 25.67057 * 18 17 16 31 31 H 1.09002 * 117.49833 * 359.97438 * 19 18 17 32 32 H 1.09002 * 117.49953 * 144.99860 * 19 18 17 33 33 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 34 34 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.5652 -4.8754 0.0024 12 6 2.6481 -5.9562 0.0030 13 8 3.3993 -5.8878 1.2437 14 6 4.3977 -6.7793 1.4045 15 8 4.6339 -7.5911 0.5315 16 6 5.2010 -6.7688 2.6350 17 6 6.1869 -7.6485 2.7935 18 6 7.0104 -7.6381 4.0555 19 6 8.5152 -7.4002 3.9153 20 6 7.9914 -8.7935 4.2693 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 0.9454 -4.9831 -0.8877 25 1 0.9447 -4.9818 0.8923 26 1 3.3216 -5.7961 -0.8388 27 1 2.1821 -6.9376 -0.0859 28 1 4.9913 -6.0471 3.4106 29 1 6.3968 -8.3699 2.0177 30 1 6.5159 -7.2279 4.9362 31 1 8.9097 -7.2517 2.9101 32 1 9.0108 -6.8336 4.7036 33 1 8.0413 -9.5612 3.4971 34 1 8.1421 -9.1433 5.2906 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815216553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:45 Heat of formation + Delta-G solvation = -100.563162 kcal Electronic energy + Delta-G solvation = -15995.101749 eV Core-core repulsion = 13087.393899 eV Total energy + Delta-G solvation = -2907.707850 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16928 -38.00557 -37.01291 -35.95557 -32.85199 -32.71177 -30.07324 -26.97343 -25.20867 -22.75020 -22.48155 -22.13222 -21.10983 -19.66292 -17.74071 -16.71007 -16.40721 -16.25915 -15.79666 -15.26135 -14.63609 -14.56324 -14.29888 -13.57732 -13.02607 -12.91935 -12.58681 -12.00560 -11.92478 -11.78218 -11.51482 -11.38507 -10.92543 -10.88077 -10.82446 -10.74144 -10.38643 -10.32499 -10.03807 -9.41055 -9.13147 -8.86132 -8.20133 -6.11009 -4.12763 0.98575 2.84297 2.95155 3.33030 3.35348 3.39552 3.57105 4.28363 4.33512 4.48084 4.59177 4.73526 4.78007 4.97526 5.14986 5.25419 5.26354 5.26610 5.48515 5.49608 5.68697 5.72459 5.87080 5.90202 6.04329 6.15050 6.20211 6.62022 7.06531 7.40918 7.78784 7.90044 8.13596 8.53850 8.99663 9.51914 11.00555 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.003817 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.688131 B = 7334.291490 C = 8171.629146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.494 3.506 15 O -0.524 6.524 16 C -0.183 4.183 17 C -0.032 4.032 18 C -0.141 4.141 19 C -0.164 4.164 20 C -0.171 4.171 21 H 0.265 0.735 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.432 -15.995 7.471 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.251 6.251 14 C 0.341 3.659 15 O -0.416 6.416 16 C -0.202 4.202 17 C -0.051 4.051 18 C -0.159 4.159 19 C -0.201 4.201 20 C -0.208 4.208 21 H 0.074 0.926 22 H 0.024 0.976 23 H 0.025 0.975 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.493 -16.040 7.189 21.002 hybrid contribution -0.115 0.855 -0.159 0.877 sum 11.378 -15.186 7.031 20.236 Atomic orbital electron populations 1.69949 1.06110 1.27311 1.50480 1.24949 0.94991 0.99447 0.95098 0.86375 0.79297 0.81806 0.78879 1.20000 1.21152 1.19965 1.21022 0.94091 0.89328 1.50964 0.91540 1.20234 0.88743 0.83493 0.95501 1.87922 1.35322 1.12626 1.95225 1.22324 0.93265 0.85455 1.00567 1.23214 0.93666 0.98763 0.84271 1.86697 1.43329 1.53671 1.41446 1.21487 0.79038 0.78082 0.87303 1.90813 1.68536 1.38553 1.43712 1.21895 0.98247 1.03141 0.96884 1.23120 0.91443 0.94846 0.95650 1.21322 0.91781 1.05266 0.97526 1.23008 0.94043 0.99368 1.03679 1.23042 1.02725 0.91750 1.03250 0.92571 0.97603 0.97488 0.91923 0.93170 0.90490 0.90425 0.84103 0.85332 0.86295 0.88217 0.87965 0.88277 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -15.42 9.43 -34.44 -0.32 -15.74 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.40 5.69 36.01 0.20 5.61 16 10 O -0.39 -9.71 10.30 -38.81 -0.40 -10.11 16 11 C 0.06 1.16 6.33 37.15 0.24 1.39 16 12 C 0.07 1.24 5.86 37.15 0.22 1.46 16 13 O -0.34 -5.95 10.20 -43.56 -0.44 -6.39 16 14 C 0.49 7.84 7.91 34.26 0.27 8.11 16 15 O -0.52 -9.15 16.01 -19.29 -0.31 -9.45 16 16 C -0.18 -2.23 9.80 -37.85 -0.37 -2.60 16 17 C -0.03 -0.32 9.24 -36.10 -0.33 -0.66 16 18 C -0.14 -1.09 6.01 -91.74 -0.55 -1.64 16 19 C -0.16 -1.11 10.23 -26.73 -0.27 -1.38 16 20 C -0.17 -1.07 10.24 -26.69 -0.27 -1.34 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.13 1.34 7.49 -52.49 -0.39 0.94 16 30 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -33.38 308.07 -7.10 -40.48 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -5.01 Total: -4.57 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.30 Total: -5.26 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -1.15 Total: -25.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.38 -7.10 -40.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.080 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds