Wall clock time and date at job start Mon Mar 30 2020 03:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48499 * 109.47472 * 239.99765 * 3 2 1 5 5 H 1.48496 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46957 * 119.99927 * 3 2 1 7 7 C 1.37878 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99771 * 0.02562 * 7 2 1 10 10 O 1.42909 * 109.46797 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99746 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47204 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.47069 * 64.99497 * 12 11 10 14 14 C 1.34805 * 117.00060 * 179.97438 * 13 12 11 15 15 O 1.21531 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.46952 * 120.00040 * 179.97438 * 14 13 12 17 17 C 1.33086 * 120.00092 * 180.02562 * 16 14 13 18 18 C 1.50690 * 120.00313 * 180.02562 * 17 16 14 19 19 C 1.53000 * 117.50063 * 240.00268 * 18 17 16 20 20 C 1.53002 * 60.02940 * 252.49714 * 19 18 17 21 21 H 0.97000 * 120.00411 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47737 * 59.99715 * 9 7 2 23 23 H 1.09003 * 109.47038 * 299.99499 * 9 7 2 24 24 H 1.08997 * 109.47096 * 59.99527 * 11 10 9 25 25 H 1.09002 * 109.46620 * 299.99730 * 11 10 9 26 26 H 1.08997 * 109.47236 * 304.99963 * 12 11 10 27 27 H 1.09002 * 109.47537 * 184.99533 * 12 11 10 28 28 H 1.08001 * 119.99918 * 0.02562 * 16 14 13 29 29 H 1.08001 * 119.99301 * 0.02562 * 17 16 14 30 30 H 1.09007 * 115.55011 * 25.67057 * 18 17 16 31 31 H 1.09002 * 117.49833 * 359.97438 * 19 18 17 32 32 H 1.09002 * 117.49953 * 144.99860 * 19 18 17 33 33 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 34 34 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.5652 -4.8754 0.0024 12 6 2.6481 -5.9562 0.0030 13 8 3.3993 -5.8878 1.2437 14 6 4.3977 -6.7793 1.4045 15 8 4.6339 -7.5911 0.5315 16 6 5.2010 -6.7688 2.6350 17 6 6.1869 -7.6485 2.7935 18 6 7.0104 -7.6381 4.0555 19 6 8.5152 -7.4002 3.9153 20 6 7.9914 -8.7935 4.2693 21 1 -0.4851 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 0.9454 -4.9831 -0.8877 25 1 0.9447 -4.9818 0.8923 26 1 3.3216 -5.7961 -0.8388 27 1 2.1821 -6.9376 -0.0859 28 1 4.9913 -6.0471 3.4106 29 1 6.3968 -8.3699 2.0177 30 1 6.5159 -7.2279 4.9362 31 1 8.9097 -7.2517 2.9101 32 1 9.0108 -6.8336 4.7036 33 1 8.0413 -9.5612 3.4971 34 1 8.1421 -9.1433 5.2906 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815216553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:44 Heat of formation + Delta-G solvation = -120.580015 kcal Electronic energy + Delta-G solvation = -15995.969745 eV Core-core repulsion = 13087.393899 eV Total energy + Delta-G solvation = -2908.575846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43058 -38.90554 -38.49325 -37.40253 -34.95815 -33.70757 -31.65166 -29.07464 -26.25682 -24.56474 -23.56228 -23.23253 -22.13753 -20.55580 -18.93319 -18.69541 -17.91529 -17.65662 -17.02431 -16.58995 -16.31377 -16.17437 -15.47573 -14.98252 -14.42611 -14.25357 -13.87926 -13.53934 -13.24287 -12.94691 -12.69721 -12.65798 -12.46573 -12.38030 -12.18313 -12.02345 -11.76266 -11.70966 -11.31252 -11.27591 -10.90289 -10.29047 -10.20652 -8.33069 -6.45725 0.00683 1.40137 1.45016 1.53486 1.67626 1.85946 2.34229 2.98941 3.00709 3.04544 3.48626 3.89705 3.90861 3.96463 3.98517 4.08301 4.12535 4.38802 4.40489 4.47669 4.63949 4.80157 4.83610 4.98837 5.05937 5.15403 5.21174 5.25265 5.35765 5.39020 5.53011 5.93762 6.48192 6.66860 6.77932 7.25890 8.79019 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.003817 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.688131 B = 7334.291490 C = 8171.629146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.054 3.946 12 C 0.077 3.923 13 O -0.357 6.357 14 C 0.492 3.508 15 O -0.548 6.548 16 C -0.210 4.210 17 C -0.002 4.002 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.160 4.160 21 H 0.272 0.728 22 H -0.007 1.007 23 H -0.010 1.010 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.152 0.848 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 -16.043 8.341 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.331 6.331 11 C -0.023 4.023 12 C 0.004 3.996 13 O -0.273 6.273 14 C 0.341 3.659 15 O -0.442 6.442 16 C -0.229 4.229 17 C -0.020 4.020 18 C -0.176 4.176 19 C -0.199 4.199 20 C -0.196 4.196 21 H 0.081 0.919 22 H 0.011 0.989 23 H 0.007 0.993 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.127 0.873 28 H 0.170 0.830 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.902 -16.115 8.064 22.163 hybrid contribution -0.520 0.726 -0.408 0.981 sum 12.382 -15.390 7.656 21.184 Atomic orbital electron populations 1.70049 1.07709 1.28821 1.50259 1.25958 0.96000 1.03361 0.93785 0.85227 0.78116 0.76640 0.79388 1.19048 1.19806 1.19000 1.21370 0.94109 0.90967 1.52660 0.92180 1.19880 0.88559 0.84356 0.93906 1.87867 1.35612 1.14249 1.95338 1.22653 0.94455 0.83287 1.01911 1.23201 0.93151 0.99240 0.84002 1.86687 1.44182 1.54679 1.41745 1.22099 0.78533 0.77190 0.88123 1.90788 1.69171 1.39430 1.44798 1.21887 0.99513 1.05325 0.96183 1.23352 0.89843 0.92724 0.96113 1.21415 0.92197 1.07330 0.96632 1.23113 0.92691 1.00059 1.04068 1.23167 1.00721 0.91362 1.04375 0.91927 0.98939 0.99261 0.89828 0.92502 0.91095 0.87295 0.82987 0.85701 0.85211 0.88608 0.86574 0.88008 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -33.62 9.43 25.60 0.24 -33.38 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.86 5.69 71.24 0.41 12.27 16 10 O -0.41 -20.81 10.30 -145.56 -1.50 -22.31 16 11 C 0.05 2.02 6.33 71.98 0.46 2.48 16 12 C 0.08 2.56 5.86 71.98 0.42 2.98 16 13 O -0.36 -12.75 10.20 -54.50 -0.56 -13.30 16 14 C 0.49 15.67 7.91 70.10 0.55 16.23 16 15 O -0.55 -19.17 16.01 19.73 0.32 -18.85 16 16 C -0.21 -5.05 9.80 23.40 0.23 -4.82 16 17 C 0.00 -0.03 9.24 24.53 0.23 0.19 16 18 C -0.16 -2.12 6.01 -11.52 -0.07 -2.19 16 19 C -0.16 -1.83 10.23 30.60 0.31 -1.51 16 20 C -0.16 -1.58 10.24 30.62 0.31 -1.26 16 21 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 22 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 23 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 24 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.13 2.48 7.49 -2.91 -0.02 2.46 16 30 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -71.70 308.07 5.19 -66.51 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.07 Total: 5.16 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 3.55 Total: -8.11 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.28 Total: -55.79 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.74 Total: -54.47 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.70 5.19 -66.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815216553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.073 kcal (2) G-P(sol) polarization free energy of solvation -71.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds