Wall clock time and date at job start Mon Mar 30 2020 03:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99745 * 2 1 4 4 C 1.50697 * 115.54844 * 296.83548 * 3 2 1 5 5 O 1.20827 * 119.99614 * 144.08910 * 4 3 2 6 6 O 1.34225 * 120.00037 * 324.09188 * 4 3 2 7 7 C 1.45209 * 116.99760 * 185.22797 * 6 4 3 8 8 C 1.53003 * 109.47038 * 183.79122 * 7 6 4 9 9 C 1.50707 * 115.54762 * 272.47180 * 8 7 6 10 10 H 1.08001 * 119.99875 * 115.16913 * 9 8 7 11 11 C 1.37878 * 119.99626 * 295.16391 * 9 8 7 12 12 N 1.31514 * 120.00164 * 355.57047 * 11 9 8 13 13 Si 1.86799 * 119.99605 * 175.56303 * 11 9 8 14 14 H 1.48496 * 109.47094 * 60.00484 * 13 11 9 15 15 H 1.48502 * 109.47064 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47152 * 300.00319 * 13 11 9 17 17 C 1.52991 * 117.50029 * 126.76017 * 8 7 6 18 18 C 1.52995 * 60.00109 * 252.51070 * 17 8 7 19 19 C 1.52998 * 117.49930 * 82.51269 * 3 2 1 20 20 C 1.53003 * 117.49649 * 151.17146 * 3 2 1 21 21 H 1.08998 * 109.47615 * 303.28077 * 1 2 3 22 22 H 1.09000 * 109.46989 * 63.28665 * 1 2 3 23 23 H 1.09007 * 109.47179 * 183.28049 * 1 2 3 24 24 H 1.09005 * 109.47198 * 63.79267 * 7 6 4 25 25 H 1.09003 * 109.47090 * 303.79104 * 7 6 4 26 26 H 0.97001 * 119.99674 * 185.02482 * 12 11 9 27 27 H 1.09004 * 117.49731 * 359.97438 * 17 8 7 28 28 H 1.09001 * 117.49794 * 145.01908 * 17 8 7 29 29 H 1.09001 * 117.50024 * 252.50770 * 18 17 8 30 30 H 1.08999 * 117.51604 * 107.48252 * 18 17 8 31 31 H 1.09005 * 117.49572 * 215.00342 * 19 3 2 32 32 H 1.09003 * 117.49903 * 0.02562 * 19 3 2 33 33 H 1.08996 * 117.49907 * 359.97264 * 20 3 2 34 34 H 1.08999 * 117.49547 * 144.97215 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7138 2.1488 -1.2132 5 8 1.5564 3.3411 -1.0963 6 8 1.6246 1.5755 -2.4236 7 6 1.4531 2.4612 -3.5614 8 6 1.2774 1.6292 -4.8334 9 6 2.5523 1.2384 -5.5356 10 1 2.8331 0.1979 -5.6056 11 6 3.3601 2.2093 -6.0888 12 7 2.9763 3.4672 -6.0806 13 14 4.9997 1.7379 -6.8497 14 1 4.7720 0.7831 -7.9640 15 1 5.6721 2.9554 -7.3701 16 1 5.8585 1.1007 -5.8195 17 6 0.0515 1.9171 -5.7022 18 6 0.1162 0.6338 -4.8717 19 6 2.1359 2.0228 1.3455 20 6 3.3837 1.4673 0.6544 21 1 -0.3634 0.5639 0.8591 22 1 -0.3633 0.4620 -0.9180 23 1 -0.3634 -1.0260 0.0588 24 1 2.3322 3.0978 -3.6622 25 1 0.5704 3.0823 -3.4087 26 1 3.5089 4.1396 -6.5333 27 1 -0.6302 2.6990 -5.3674 28 1 0.1669 1.8241 -6.7821 29 1 0.2740 -0.3035 -5.4052 30 1 -0.5225 0.5715 -3.9906 31 1 2.0042 3.1048 1.3533 32 1 1.7757 1.4987 2.2309 33 1 3.8437 0.5781 1.0853 34 1 4.0730 2.1835 0.2072 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842731883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:15 Heat of formation + Delta-G solvation = -72.907753 kcal Electronic energy + Delta-G solvation = -17624.960142 eV Core-core repulsion = 14718.451521 eV Total energy + Delta-G solvation = -2906.508621 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28672 -38.19079 -36.77664 -35.45401 -34.52953 -32.07127 -27.28248 -26.72975 -25.47972 -23.88193 -22.59111 -21.22934 -19.82257 -19.24627 -17.96828 -16.71089 -16.04333 -15.85127 -15.33104 -14.89802 -14.57657 -14.28018 -14.02664 -13.70401 -13.16535 -12.29644 -12.13400 -11.76373 -11.62698 -11.59841 -11.08620 -10.99441 -10.95373 -10.81565 -10.54884 -10.31708 -10.00773 -9.89664 -9.72225 -9.39121 -8.85412 -8.60385 -8.24286 -6.10055 -4.15722 2.44854 3.03433 3.28968 3.29678 3.33843 3.36908 3.94171 4.36339 4.66371 4.83632 4.93852 5.13365 5.33427 5.36410 5.46508 5.51050 5.53090 5.74114 5.75489 5.96655 5.99422 6.24462 6.32511 6.56541 6.63082 6.69172 6.97301 7.00070 7.21989 7.33699 7.40289 7.83829 8.32637 8.34984 8.84580 9.48903 10.98499 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.007368 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.602420 B = 3799.120327 C = 4230.570912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.330 6.330 3 C 0.029 3.971 4 C 0.473 3.527 5 O -0.512 6.512 6 O -0.331 6.331 7 C 0.112 3.888 8 C 0.044 3.956 9 C -0.491 4.491 10 H 0.064 0.936 11 C 0.067 3.933 12 N -0.884 5.884 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.165 4.165 18 C -0.195 4.195 19 C -0.168 4.168 20 C -0.127 4.127 21 H 0.043 0.957 22 H 0.048 0.952 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.264 0.736 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -3.826 11.886 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.248 6.248 3 C -0.013 4.013 4 C 0.315 3.685 5 O -0.403 6.403 6 O -0.246 6.246 7 C 0.039 3.961 8 C 0.043 3.957 9 C -0.529 4.529 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.521 5.521 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.203 4.203 18 C -0.232 4.232 19 C -0.205 4.205 20 C -0.164 4.164 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.722 -3.445 11.844 12.632 hybrid contribution 0.548 0.194 -0.626 0.855 sum -2.174 -3.251 11.218 11.880 Atomic orbital electron populations 1.22865 0.80440 1.03057 1.00668 1.87942 1.20263 1.22262 1.94308 1.21314 1.03150 0.86260 0.90551 1.22770 0.73686 0.86750 0.85320 1.90630 1.46322 1.16345 1.86957 1.86576 1.80593 1.42563 1.14861 1.23039 1.01239 0.90982 0.80799 1.18782 0.89611 0.96049 0.91219 1.20470 1.03602 0.93250 1.35567 0.91794 1.25032 0.98001 0.94841 0.95693 1.69936 1.39120 1.00724 1.42274 0.86602 0.83731 0.77866 0.79563 1.20093 1.21183 1.19978 1.22790 1.02313 0.97159 0.98057 1.22790 1.04785 0.94238 1.01424 1.23623 1.01010 1.01938 0.93908 1.23299 0.89450 1.03544 1.00109 0.93858 0.93285 0.88888 0.89476 0.93995 0.92643 0.91632 0.89596 0.90101 0.91367 0.86751 0.87047 0.86534 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.78 101.05 1.09 1.42 16 2 O -0.33 -5.24 10.85 -37.75 -0.41 -5.65 16 3 C 0.03 0.47 2.48 -91.77 -0.23 0.24 16 4 C 0.47 9.60 6.81 36.00 0.25 9.84 16 5 O -0.51 -11.23 15.94 -18.75 -0.30 -11.53 16 6 O -0.33 -7.60 10.07 -41.72 -0.42 -8.02 16 7 C 0.11 2.78 5.36 37.16 0.20 2.98 16 8 C 0.04 1.11 1.60 -155.66 -0.25 0.87 16 9 C -0.49 -13.57 8.83 -34.44 -0.30 -13.87 16 10 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 11 C 0.07 1.85 5.25 -17.82 -0.09 1.76 16 12 N -0.88 -25.03 12.43 55.43 0.69 -24.34 16 13 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 C -0.17 -3.84 9.88 -26.74 -0.26 -4.11 16 18 C -0.20 -4.31 9.83 -26.74 -0.26 -4.57 16 19 C -0.17 -2.05 9.99 -26.69 -0.27 -2.31 16 20 C -0.13 -1.63 10.19 -26.69 -0.27 -1.90 16 21 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.71 7.68 -51.93 -0.40 0.32 16 23 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.09 2.39 7.13 -51.93 -0.37 2.02 16 25 H 0.04 1.01 7.74 -51.93 -0.40 0.61 16 26 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 27 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 28 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 29 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.11 1.43 7.67 -51.93 -0.40 1.04 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -30.51 300.68 -6.25 -36.76 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.91 Total: 1.78 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.41 Total: -9.65 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.69 Total: -24.34 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.13 Total: -25.20 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.51 -6.25 -36.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842731883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.152 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds