Wall clock time and date at job start Mon Mar 30 2020 03:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.20818 * 120.00023 * 239.99958 * 12 2 1 14 14 O 1.34233 * 119.99764 * 60.00668 * 12 2 1 15 15 C 1.45194 * 116.99854 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47152 * 179.97438 * 15 14 12 17 17 O 1.20765 * 120.00049 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00324 * 180.02562 * 16 15 14 19 19 C 1.52996 * 115.54911 * 34.41785 * 18 16 15 20 20 C 1.53005 * 117.49803 * 248.75154 * 18 16 15 21 21 C 1.52995 * 117.50229 * 180.08997 * 18 16 15 22 22 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47023 * 299.99618 * 15 14 12 27 27 H 1.08998 * 109.47174 * 59.99840 * 15 14 12 28 28 H 1.09001 * 109.47279 * 85.58568 * 19 18 16 29 29 H 1.09004 * 109.47172 * 205.58270 * 19 18 16 30 30 H 1.08997 * 109.47473 * 325.58467 * 19 18 16 31 31 H 1.08992 * 117.49917 * 359.97438 * 20 18 16 32 32 H 1.09004 * 117.49773 * 145.01827 * 20 18 16 33 33 H 1.09000 * 117.50710 * 214.97574 * 21 18 16 34 34 H 1.09006 * 117.49698 * 0.02562 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 6 2.0323 -0.7105 -1.2304 13 8 2.7269 -1.6928 -1.1194 14 8 1.7081 -0.2520 -2.4496 15 6 2.2277 -0.9859 -3.5895 16 6 1.7628 -0.3295 -4.8639 17 8 1.0659 0.6555 -4.8163 18 6 2.1676 -0.9023 -6.1977 19 6 2.2902 -2.4264 -6.2515 20 6 3.1384 -0.0849 -7.0523 21 6 1.6652 -0.1893 -7.4546 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7164 1.1670 3.4843 26 1 3.3172 -0.9848 -3.5564 27 1 1.8643 -2.0130 -3.5567 28 1 1.3126 -2.8626 -6.4572 29 1 2.9868 -2.7073 -7.0414 30 1 2.6584 -2.7954 -5.2942 31 1 3.4840 0.8673 -6.6500 32 1 3.8642 -0.6330 -7.6531 33 1 1.4223 -0.8058 -8.3201 34 1 1.0422 0.6945 -7.3168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849851906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:17 Heat of formation + Delta-G solvation = -124.330862 kcal Electronic energy + Delta-G solvation = -16994.243454 eV Core-core repulsion = 14085.504959 eV Total energy + Delta-G solvation = -2908.738495 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.72312 -40.81583 -37.87625 -37.32270 -35.95548 -32.79031 -31.16285 -28.82395 -27.31242 -25.35841 -23.92731 -23.41234 -21.67742 -19.72877 -18.73000 -18.14688 -17.81235 -17.53583 -17.17325 -16.49649 -16.02309 -15.49083 -15.20600 -14.71905 -14.39312 -13.95367 -13.83814 -13.54237 -13.34832 -13.19417 -12.98914 -12.78488 -12.63444 -12.41994 -12.33352 -12.06806 -11.82323 -11.60681 -11.21903 -11.13193 -11.00138 -10.66810 -10.54325 -8.21360 -6.35650 0.65135 1.34017 1.42336 1.42501 1.52954 1.63014 2.41870 2.70652 2.84789 3.08793 3.56703 3.84472 3.89890 3.96471 4.04664 4.10211 4.23116 4.63876 4.68390 4.77506 4.85611 4.86794 4.91998 4.94114 4.95607 5.18224 5.24351 5.31334 5.38553 5.65322 5.83849 6.05404 6.29505 6.71356 6.94449 7.33567 8.85693 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.053844 B = 0.004733 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.896924 B = 5914.608931 C = 6213.405567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.475 3.525 13 O -0.533 6.533 14 O -0.358 6.358 15 C 0.004 3.996 16 C 0.395 3.605 17 O -0.471 6.471 18 C -0.199 4.199 19 C -0.114 4.114 20 C -0.134 4.134 21 C -0.147 4.147 22 H 0.032 0.968 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.268 0.732 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -4.561 -18.614 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.422 6.422 14 O -0.276 6.276 15 C -0.070 4.070 16 C 0.271 3.729 17 O -0.344 6.344 18 C -0.200 4.200 19 C -0.171 4.171 20 C -0.171 4.171 21 C -0.184 4.184 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.736 -4.214 -18.458 19.129 hybrid contribution 0.271 -0.268 1.072 1.138 sum 3.007 -4.481 -17.385 18.204 Atomic orbital electron populations 1.21561 0.94534 1.00019 1.01737 1.18712 0.95864 0.96197 0.86277 0.93395 1.21280 1.32780 1.13282 0.90196 0.92095 1.25712 0.94854 0.95619 1.01787 1.69988 1.36723 1.23459 1.24775 0.85344 0.78349 0.78499 0.78501 1.19774 1.19921 1.19806 1.24889 0.76087 0.82666 0.84373 1.90468 1.37169 1.27373 1.87210 1.86665 1.70076 1.55708 1.15122 1.23627 1.01953 0.97865 0.83591 1.24018 0.75960 0.82325 0.90586 1.90417 1.29979 1.24380 1.89670 1.21927 1.10632 0.98107 0.89357 1.21431 1.03642 0.88009 1.03980 1.23310 0.93536 1.00507 0.99724 1.23177 0.97260 1.02141 0.95787 0.94853 0.90263 0.94020 0.92231 0.86700 0.86630 0.91067 0.88855 0.91593 0.89212 0.84376 0.84998 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.90 71.98 0.64 -5.35 16 2 C 0.05 2.58 2.74 -12.29 -0.03 2.55 16 3 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.54 -30.87 8.37 25.60 0.21 -30.65 16 5 H 0.06 3.63 6.76 -2.91 -0.02 3.61 16 6 C 0.02 1.11 5.31 84.66 0.45 1.56 16 7 N -0.91 -51.47 11.33 21.45 0.24 -51.22 16 8 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 C 0.47 22.97 7.25 71.24 0.52 23.49 16 13 O -0.53 -26.99 15.21 21.99 0.33 -26.65 16 14 O -0.36 -15.23 9.66 -45.08 -0.44 -15.66 16 15 C 0.00 0.11 4.99 71.24 0.36 0.47 16 16 C 0.40 11.27 6.85 29.10 0.20 11.47 16 17 O -0.47 -17.21 16.40 17.38 0.29 -16.92 16 18 C -0.20 -3.70 2.58 -52.93 -0.14 -3.84 16 19 C -0.11 -1.51 9.71 71.98 0.70 -0.81 16 20 C -0.13 -1.92 9.88 30.62 0.30 -1.62 16 21 C -0.15 -2.33 9.77 30.62 0.30 -2.03 16 22 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.08 4.21 6.08 -2.39 -0.01 4.19 16 24 H 0.04 1.87 8.11 -2.39 -0.02 1.85 16 25 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 26 H 0.12 3.22 8.13 -2.39 -0.02 3.20 16 27 H 0.12 3.22 7.32 -2.39 -0.02 3.21 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.78 7.90 -2.38 -0.02 0.76 16 30 H 0.07 0.94 6.52 -2.39 -0.02 0.92 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.14 1.14 8.05 -2.39 -0.02 1.12 16 33 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.76 7.67 -2.38 -0.02 1.74 16 Total: -1.00 -68.50 295.37 7.05 -61.45 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.09 Total: 7.79 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 3.51 Total: -4.75 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.24 Total: -51.22 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: 0.18 Total: -59.24 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.50 7.05 -61.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849851906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.880 kcal (2) G-P(sol) polarization free energy of solvation -68.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds