Wall clock time and date at job start Mon Mar 30 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86804 * 119.99643 * 2 1 4 4 H 1.48505 * 109.47317 * 269.99880 * 3 2 1 5 5 H 1.48494 * 109.47231 * 30.00253 * 3 2 1 6 6 H 1.48504 * 109.46939 * 150.00285 * 3 2 1 7 7 C 1.38751 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99999 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99502 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99867 * 180.02562 * 9 7 2 11 11 O 1.21210 * 119.99939 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00345 * 180.02562 * 10 9 7 13 13 C 1.52994 * 109.47515 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.86651 * 54.55240 * 13 12 10 15 15 C 1.54097 * 110.00310 * 175.64143 * 13 12 10 16 16 C 1.54818 * 104.18808 * 121.52604 * 15 13 12 17 17 C 1.55000 * 102.09030 * 20.87976 * 16 15 13 18 18 H 1.08997 * 110.62057 * 81.47966 * 17 16 15 19 19 C 1.52998 * 110.61526 * 204.47771 * 17 16 15 20 20 C 1.53002 * 117.49794 * 244.26987 * 19 17 16 21 21 C 1.53001 * 117.49924 * 175.60867 * 19 17 16 22 22 O 1.43745 * 109.87784 * 293.54785 * 13 12 10 23 23 H 0.97002 * 120.00324 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46943 * 59.99958 * 12 10 9 25 25 H 1.09000 * 109.46932 * 300.00600 * 12 10 9 26 26 H 1.09004 * 110.48577 * 240.19885 * 15 13 12 27 27 H 1.08989 * 110.49279 * 2.71400 * 15 13 12 28 28 H 1.08996 * 110.90598 * 139.07645 * 16 15 13 29 29 H 1.09001 * 110.90139 * 262.64748 * 16 15 13 30 30 H 1.08998 * 115.54940 * 29.94190 * 19 17 16 31 31 H 1.08997 * 117.49607 * 359.97438 * 20 19 17 32 32 H 1.08997 * 117.49756 * 145.02465 * 20 19 17 33 33 H 1.09001 * 117.50120 * 214.97778 * 21 19 17 34 34 H 1.09005 * 117.49907 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0466 -1.4001 5 1 1.4458 2.6527 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2015 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2755 -3.4330 -0.0001 12 6 1.3810 -4.8392 -0.0011 13 6 2.4347 -5.9485 -0.0004 14 1 3.1202 -5.8076 0.8353 15 6 1.7509 -7.3251 0.1091 16 6 2.2150 -8.0813 -1.1596 17 6 3.4951 -7.3007 -1.5528 18 1 4.3461 -7.6354 -0.9597 19 6 3.7833 -7.4566 -3.0473 20 6 5.0709 -8.1802 -3.4467 21 6 4.9570 -6.6643 -3.6267 22 8 3.1639 -5.9309 -1.2390 23 1 -0.4851 0.8400 -0.0004 24 1 0.7586 -4.9295 -0.8914 25 1 0.7579 -4.9299 0.8886 26 1 2.0836 -7.8460 1.0069 27 1 0.6668 -7.2132 0.1138 28 1 2.4486 -9.1207 -0.9292 29 1 1.4633 -8.0186 -1.9465 30 1 2.9089 -7.5976 -3.6825 31 1 5.7127 -8.5449 -2.6447 32 1 5.0436 -8.7970 -4.3449 33 1 4.8549 -6.2846 -4.6433 34 1 5.5236 -6.0317 -2.9433 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924350221.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:47 Heat of formation + Delta-G solvation = -108.354182 kcal Electronic energy + Delta-G solvation = -17182.902136 eV Core-core repulsion = 14274.856442 eV Total energy + Delta-G solvation = -2908.045694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74949 -38.60833 -36.70110 -34.97931 -32.16330 -31.98407 -31.18319 -27.05781 -25.01979 -22.80270 -22.38860 -21.00353 -20.45825 -19.63594 -17.58392 -16.81876 -16.09743 -15.70956 -15.57735 -14.64968 -14.32071 -14.25123 -14.18883 -13.55122 -13.13752 -12.28198 -12.04776 -11.90970 -11.63667 -11.55173 -11.48284 -11.18395 -11.03953 -10.99298 -10.62569 -10.36840 -10.27709 -10.21319 -10.02877 -9.69794 -9.32456 -8.82845 -8.47270 -6.30689 -3.97806 3.18997 3.24796 3.31229 3.54805 3.70986 4.02603 4.24379 4.45838 4.62986 4.65437 4.88865 4.99563 5.03563 5.17790 5.21802 5.33279 5.41188 5.51359 5.59318 5.68077 5.74507 5.76331 5.93663 5.95403 6.03483 6.09859 6.14122 6.26651 6.39755 6.91364 7.29469 7.50915 8.07687 8.87194 9.18821 10.00440 10.88058 Molecular weight = 240.12amu Principal moments of inertia in cm(-1) A = 0.033935 B = 0.005330 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.917082 B = 5252.296106 C = 5802.874401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.378 4.378 8 H 0.094 0.906 9 O -0.222 6.222 10 C 0.401 3.599 11 O -0.545 6.545 12 C -0.104 4.104 13 C 0.094 3.906 14 H 0.074 0.926 15 C -0.154 4.154 16 C -0.145 4.145 17 C 0.101 3.899 18 H 0.066 0.934 19 C -0.149 4.149 20 C -0.178 4.178 21 C -0.165 4.165 22 O -0.344 6.344 23 H 0.267 0.733 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.717 -16.345 -3.024 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.455 4.455 8 H 0.111 0.889 9 O -0.130 6.130 10 C 0.247 3.753 11 O -0.441 6.441 12 C -0.142 4.142 13 C 0.036 3.964 14 H 0.092 0.908 15 C -0.191 4.191 16 C -0.183 4.183 17 C 0.043 3.957 18 H 0.084 0.916 19 C -0.167 4.167 20 C -0.215 4.215 21 C -0.202 4.202 22 O -0.263 6.263 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.120 0.880 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.902 -15.962 -3.136 16.728 hybrid contribution 0.255 0.655 0.111 0.711 sum 4.158 -15.307 -3.025 16.148 Atomic orbital electron populations 1.69994 1.05952 1.27412 1.47463 1.25297 0.95779 0.98747 0.96497 0.85706 0.79022 0.79985 0.78657 1.19975 1.20430 1.19188 1.21193 0.92306 0.80024 1.51938 0.88863 1.83881 1.39423 1.13410 1.76257 1.23053 0.86815 0.87127 0.78320 1.90567 1.15603 1.87977 1.49905 1.21336 0.97975 0.90054 1.04818 1.22461 0.92553 0.92968 0.88436 0.90817 1.23038 1.01974 0.95627 0.98491 1.23128 0.97869 0.99433 0.97868 1.22610 0.96384 0.83470 0.93246 0.91593 1.22202 0.93199 1.06043 0.95238 1.22991 0.99736 0.95639 1.03097 1.22868 1.01545 0.93507 1.02283 1.89126 1.74180 1.23710 1.39327 0.92277 0.88540 0.88043 0.90602 0.90025 0.90507 0.90414 0.87445 0.88863 0.88727 0.88792 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.67 55.48 0.76 -25.58 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 22.09 29.55 -169.99 -5.02 17.07 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.38 -11.68 9.65 30.92 0.30 -11.38 16 8 H 0.09 2.91 6.86 -52.49 -0.36 2.55 16 9 O -0.22 -6.64 9.75 -20.72 -0.20 -6.84 16 10 C 0.40 10.39 7.80 36.00 0.28 10.67 16 11 O -0.54 -15.41 14.73 -23.85 -0.35 -15.76 16 12 C -0.10 -1.95 5.31 -27.89 -0.15 -2.10 16 13 C 0.09 1.56 2.93 -26.16 -0.08 1.48 16 14 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 15 C -0.15 -1.80 6.65 -25.20 -0.17 -1.96 16 16 C -0.15 -1.59 6.59 -24.72 -0.16 -1.75 16 17 C 0.10 1.36 3.51 -25.68 -0.09 1.27 16 18 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 19 C -0.15 -1.82 5.51 -90.62 -0.50 -2.32 16 20 C -0.18 -1.79 10.20 -26.69 -0.27 -2.06 16 21 C -0.17 -2.07 10.21 -26.69 -0.27 -2.35 16 22 O -0.34 -6.35 10.20 -47.51 -0.48 -6.84 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 25 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.86 7.70 -51.94 -0.40 0.46 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 30 H 0.11 1.24 7.96 -51.93 -0.41 0.82 16 31 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 292.80 15.07 4.41 4.41 Total: -1.00 -35.23 292.80 -7.02 -42.25 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.92 Total: 0.72 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.21 Total: -9.42 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.76 Total: -25.58 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.04 Total: -29.45 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.23 -7.02 -42.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924350221.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.101 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds