Wall clock time and date at job start Mon Mar 30 2020 04:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.47034 * 2 1 4 4 C 1.52992 * 109.47249 * 119.99539 * 2 1 3 5 5 C 1.53007 * 117.50089 * 300.00421 * 4 2 1 6 6 C 1.53008 * 60.03045 * 107.47651 * 5 4 2 7 7 N 1.46499 * 109.47541 * 240.00325 * 2 1 3 8 8 C 1.46500 * 119.99314 * 299.99515 * 7 2 1 9 9 C 1.34776 * 120.00417 * 120.00012 * 7 2 1 10 10 O 1.21439 * 119.99673 * 356.45020 * 9 7 2 11 11 C 1.48829 * 119.99835 * 176.45269 * 9 7 2 12 12 O 1.21497 * 120.00087 * 5.93599 * 11 9 7 13 13 N 1.34775 * 119.99774 * 185.93464 * 11 9 7 14 14 C 1.36117 * 120.00077 * 180.02562 * 13 11 9 15 15 H 1.08000 * 120.00201 * 359.97438 * 14 13 11 16 16 C 1.39582 * 120.00135 * 180.02562 * 14 13 11 17 17 N 1.31016 * 120.00143 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47028 * 60.00303 * 18 16 14 20 20 H 1.48507 * 109.47167 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47489 * 300.00248 * 18 16 14 22 22 H 1.08995 * 109.47469 * 300.00269 * 1 2 3 23 23 H 1.09004 * 109.46947 * 60.00741 * 1 2 3 24 24 H 1.09003 * 109.46774 * 179.97438 * 1 2 3 25 25 H 1.08998 * 115.56605 * 154.31579 * 4 2 1 26 26 H 1.08995 * 117.49877 * 214.97518 * 5 4 2 27 27 H 1.08995 * 117.49713 * 359.97438 * 5 4 2 28 28 H 1.09000 * 117.49909 * 107.50416 * 6 5 4 29 29 H 1.08998 * 117.49927 * 252.52294 * 6 5 4 30 30 H 1.08999 * 109.47012 * 95.99370 * 8 7 2 31 31 H 1.09004 * 109.46991 * 215.99222 * 8 7 2 32 32 H 1.08996 * 109.47669 * 335.99346 * 8 7 2 33 33 H 0.97001 * 119.99830 * 0.02562 * 13 11 9 34 34 H 0.96997 * 120.00158 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.6357 -0.1493 2.6096 6 6 1.0098 -1.4539 2.1123 7 7 2.0184 -0.6905 -1.1962 8 6 1.6646 -2.0931 -1.4279 9 6 2.7933 -0.0355 -2.0833 10 8 3.0336 1.1443 -1.9247 11 6 3.3544 -0.7581 -3.2572 12 8 3.0282 -1.9079 -3.4756 13 7 4.2245 -0.1370 -4.0780 14 6 4.7373 -0.7977 -5.1519 15 1 4.4473 -1.8197 -5.3461 16 6 5.6388 -0.1546 -6.0016 17 7 5.9910 1.0851 -5.7659 18 14 6.3431 -1.0615 -7.4751 19 1 5.2374 -1.4786 -8.3744 20 1 7.2686 -0.1643 -8.2125 21 1 7.0826 -2.2624 -7.0101 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.0322 -1.1642 1.1644 26 1 2.3619 -0.2163 3.4197 27 1 1.0067 0.7408 2.6146 28 1 1.3242 -2.3792 2.5952 29 1 -0.0309 -1.4219 1.7897 30 1 0.7986 -2.1451 -2.0878 31 1 2.5060 -2.6083 -1.8914 32 1 1.4259 -2.5696 -0.4771 33 1 4.4852 0.7808 -3.9034 34 1 6.6171 1.5321 -6.3566 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036785899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:06 Heat of formation + Delta-G solvation = -35.908944 kcal Electronic energy + Delta-G solvation = -17391.043182 eV Core-core repulsion = 14518.431701 eV Total energy + Delta-G solvation = -2872.611481 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94004 -38.22788 -36.93158 -35.04611 -33.89594 -31.42138 -30.22843 -26.51583 -25.98749 -24.63342 -22.49564 -22.34097 -19.53396 -18.69030 -18.05490 -16.64925 -16.29010 -15.85268 -15.32257 -14.93765 -14.28907 -14.06339 -13.74834 -13.14396 -12.88948 -12.73873 -12.30434 -12.02619 -11.89340 -11.78576 -11.58122 -11.41938 -11.17003 -10.99457 -10.54999 -10.49805 -10.40977 -10.20327 -9.88260 -9.69235 -8.33509 -8.20132 -7.91572 -6.66379 -3.98879 2.46417 3.13741 3.17323 3.17709 3.27982 3.81378 4.05128 4.25615 4.68444 4.78858 4.93178 4.96219 5.15846 5.18672 5.35629 5.41570 5.57764 5.71372 5.75866 5.81928 5.92694 6.03782 6.06251 6.16346 6.22948 6.28569 6.62191 7.00524 7.31480 7.69184 7.81126 8.33444 8.61764 8.96580 9.32680 9.86032 10.48392 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.052120 B = 0.005205 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.093192 B = 5378.362743 C = 5590.799086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.174 4.174 6 C -0.184 4.184 7 N -0.592 5.592 8 C 0.075 3.925 9 C 0.513 3.487 10 O -0.549 6.549 11 C 0.395 3.605 12 O -0.589 6.589 13 N -0.499 5.499 14 C -0.306 4.306 15 H 0.112 0.888 16 C 0.031 3.969 17 N -0.869 5.869 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.114 0.886 32 H 0.052 0.948 33 H 0.404 0.596 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 -2.830 11.347 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 H 0.121 0.879 4 C -0.178 4.178 5 C -0.212 4.212 6 C -0.221 4.221 7 N -0.325 5.325 8 C -0.067 4.067 9 C 0.299 3.701 10 O -0.427 6.427 11 C 0.180 3.820 12 O -0.478 6.478 13 N -0.132 5.132 14 C -0.437 4.437 15 H 0.130 0.870 16 C -0.175 4.175 17 N -0.507 5.507 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.194 1.194 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.455 -2.790 11.178 13.723 hybrid contribution 0.461 0.140 -0.512 0.703 sum -6.994 -2.650 10.667 13.027 Atomic orbital electron populations 1.22223 0.95211 1.02339 1.02107 1.20507 0.93557 0.97432 0.82588 0.87939 1.22700 0.99915 1.03861 0.91365 1.22930 1.03769 0.97558 0.96918 1.23166 0.99020 0.95923 1.03989 1.47620 1.50116 1.13318 1.21490 1.22270 1.03818 0.80723 0.99932 1.20741 0.78448 0.86728 0.84172 1.90667 1.59950 1.15982 1.76087 1.18918 0.87883 0.88170 0.87055 1.90456 1.64929 1.17620 1.74819 1.41571 1.34782 1.15327 1.21558 1.19826 1.22537 0.99485 1.01854 0.87001 1.25583 0.96564 0.95721 0.99682 1.69478 1.31792 1.11009 1.38443 0.85782 0.78845 0.78972 0.79895 1.19389 1.20609 1.19390 0.91714 0.92136 0.91849 0.87496 0.88866 0.88710 0.89083 0.88092 0.93351 0.86825 0.92940 0.76035 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 7.79 37.16 0.29 -1.65 16 2 C 0.16 2.42 3.03 -67.94 -0.21 2.21 16 3 H 0.10 1.71 6.90 -51.92 -0.36 1.35 16 4 C -0.16 -2.00 5.00 -90.58 -0.45 -2.45 16 5 C -0.17 -1.75 9.90 -26.72 -0.26 -2.01 16 6 C -0.18 -1.82 9.43 -26.69 -0.25 -2.07 16 7 N -0.59 -10.74 2.76 -174.68 -0.48 -11.23 16 8 C 0.07 1.24 8.56 59.85 0.51 1.75 16 9 C 0.51 11.51 7.72 -11.88 -0.09 11.41 16 10 O -0.55 -13.22 15.81 5.42 0.09 -13.14 16 11 C 0.39 9.96 7.70 -11.88 -0.09 9.87 16 12 O -0.59 -15.27 12.69 5.37 0.07 -15.20 16 13 N -0.50 -13.38 5.24 -11.59 -0.06 -13.44 16 14 C -0.31 -8.41 9.67 -15.15 -0.15 -8.55 16 15 H 0.11 3.11 7.15 -52.49 -0.38 2.73 16 16 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 17 N -0.87 -23.34 13.03 55.53 0.72 -22.62 16 18 Si 0.94 20.03 29.56 -169.99 -5.02 15.01 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 22 H 0.06 0.64 7.07 -51.93 -0.37 0.27 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.71 6.51 -51.93 -0.34 0.37 16 25 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.09 0.88 7.61 -51.93 -0.40 0.49 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.10 0.93 5.85 -51.93 -0.30 0.62 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.11 2.20 5.35 -51.94 -0.28 1.92 16 32 H 0.05 0.70 7.17 -51.93 -0.37 0.33 16 33 H 0.40 11.00 7.36 -40.82 -0.30 10.70 16 34 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 284.70 15.07 4.29 4.29 Total: -1.00 -29.44 284.70 -5.53 -34.97 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -4.34 Total: 12.13 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -0.80 Total: 9.22 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.18 Total: -47.28 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: 0.15 Total: -28.34 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.44 -5.53 -34.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036785899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.937 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds