Wall clock time and date at job start Mon Mar 30 2020 04:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47669 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99625 * 2 1 3 5 5 C 1.52995 * 117.49928 * 128.62150 * 4 2 1 6 6 C 1.52995 * 60.00341 * 252.51280 * 5 4 2 7 7 N 1.46506 * 109.47071 * 119.99813 * 2 1 3 8 8 C 1.46500 * 119.99848 * 60.00087 * 7 2 1 9 9 C 1.34771 * 120.00169 * 239.99887 * 7 2 1 10 10 O 1.21444 * 119.99905 * 5.35587 * 9 7 2 11 11 C 1.48831 * 120.00167 * 185.35643 * 9 7 2 12 12 O 1.21508 * 119.99768 * 5.98186 * 11 9 7 13 13 N 1.34771 * 120.00352 * 185.98560 * 11 9 7 14 14 C 1.36118 * 120.00261 * 179.97438 * 13 11 9 15 15 H 1.07999 * 119.99851 * 359.97438 * 14 13 11 16 16 C 1.39588 * 119.99786 * 180.02562 * 14 13 11 17 17 N 1.31009 * 120.00488 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99603 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47498 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47413 * 119.99774 * 18 16 14 21 21 H 1.48509 * 109.46801 * 239.99725 * 18 16 14 22 22 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46591 * 59.99983 * 1 2 3 24 24 H 1.09002 * 109.46501 * 300.00194 * 1 2 3 25 25 H 1.08997 * 115.55400 * 274.33521 * 4 2 1 26 26 H 1.09001 * 117.50037 * 0.02562 * 5 4 2 27 27 H 1.09001 * 117.50054 * 145.02356 * 5 4 2 28 28 H 1.09001 * 117.50370 * 252.50775 * 6 5 4 29 29 H 1.09002 * 117.49942 * 107.48883 * 6 5 4 30 30 H 1.08998 * 109.47347 * 95.24800 * 8 7 2 31 31 H 1.09000 * 109.47052 * 215.25606 * 8 7 2 32 32 H 1.09006 * 109.47027 * 335.24809 * 8 7 2 33 33 H 0.97006 * 119.99761 * 0.02562 * 13 11 9 34 34 H 0.96994 * 120.00335 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.0741 0.0050 -2.1116 6 6 1.6358 -0.1496 -2.6096 7 7 2.0184 -0.6906 1.1962 8 6 1.6644 -2.0932 1.4281 9 6 2.7932 -0.0356 2.0834 10 8 3.0067 1.1516 1.9428 11 6 3.3872 -0.7673 3.2353 12 8 3.2647 -1.9734 3.3173 13 7 4.0610 -0.0921 4.1874 14 6 4.6038 -0.7613 5.2412 15 1 4.4942 -1.8332 5.3145 16 6 5.3012 -0.0618 6.2276 17 7 5.4337 1.2385 6.1389 18 14 6.0467 -0.9802 7.6733 19 1 5.7587 -2.4309 7.5400 20 1 7.5161 -0.7664 7.6910 21 1 5.4574 -0.4733 8.9387 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3632 0.5139 0.8900 25 1 2.1267 -1.8045 -1.1642 26 1 3.3915 0.9966 -1.7889 27 1 3.8416 -0.6003 -2.5941 28 1 1.4568 -0.8566 -3.4196 29 1 1.0065 0.7404 -2.6146 30 1 2.4615 -2.7357 1.0540 31 1 1.5323 -2.2627 2.4967 32 1 0.7359 -2.3247 0.9060 33 1 4.1584 0.8708 4.1221 34 1 5.9185 1.7245 6.8241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036785900.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:09 Heat of formation + Delta-G solvation = -61.697593 kcal Electronic energy + Delta-G solvation = -17386.387696 eV Core-core repulsion = 14512.657935 eV Total energy + Delta-G solvation = -2873.729761 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.57901 -39.57226 -38.47909 -36.75173 -35.74047 -33.45000 -31.67262 -28.14389 -27.66275 -25.79344 -23.91673 -23.15287 -21.17351 -20.50543 -19.99298 -18.32701 -18.07762 -17.03844 -16.90579 -16.40000 -15.77187 -15.46424 -15.36563 -14.84648 -14.56628 -14.13621 -13.72003 -13.67026 -13.28445 -13.17642 -12.94240 -12.88539 -12.54590 -12.31918 -12.14571 -12.07909 -11.79768 -11.64409 -11.34120 -10.95916 -10.27010 -9.97358 -9.72660 -8.64995 -6.09592 0.59859 1.40874 1.45574 1.56406 1.72197 2.27419 2.35106 2.86822 3.12697 3.16850 3.62556 3.93436 3.98755 4.10283 4.19261 4.26926 4.38919 4.50995 4.73270 4.76534 4.83167 4.94252 5.00201 5.08302 5.21669 5.26283 5.27253 5.33346 5.54856 5.70895 6.09172 6.33743 6.77849 6.98198 7.29194 7.81010 8.51369 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.046476 B = 0.005331 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.321383 B = 5250.783450 C = 5414.757134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.076 0.924 4 C -0.176 4.176 5 C -0.195 4.195 6 C -0.140 4.140 7 N -0.579 5.579 8 C 0.089 3.911 9 C 0.512 3.488 10 O -0.573 6.573 11 C 0.392 3.608 12 O -0.601 6.601 13 N -0.515 5.515 14 C -0.343 4.343 15 H 0.100 0.900 16 C -0.006 4.006 17 N -0.899 5.899 18 Si 1.011 2.989 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.266 1.266 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.398 0.602 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -3.243 -12.634 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.055 3.945 3 H 0.094 0.906 4 C -0.195 4.195 5 C -0.232 4.232 6 C -0.178 4.178 7 N -0.311 5.311 8 C -0.053 4.053 9 C 0.297 3.703 10 O -0.453 6.453 11 C 0.177 3.823 12 O -0.490 6.490 13 N -0.149 5.149 14 C -0.472 4.472 15 H 0.118 0.882 16 C -0.210 4.210 17 N -0.537 5.537 18 Si 0.831 3.169 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.191 1.191 22 H 0.095 0.905 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.129 0.871 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.233 0.767 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.999 -3.256 -12.562 15.244 hybrid contribution 0.733 0.387 0.791 1.146 sum -7.266 -2.869 -11.771 14.128 Atomic orbital electron populations 1.22069 0.92072 1.03669 1.02913 1.20874 0.95826 0.95959 0.81853 0.90555 1.22556 1.05698 0.99741 0.91457 1.23073 0.93933 1.01665 1.04520 1.23034 0.96299 1.03381 0.95051 1.47729 1.48086 1.13913 1.21400 1.22018 1.00822 0.79025 1.03415 1.20280 0.79443 0.86478 0.84131 1.90647 1.61989 1.16177 1.76457 1.19550 0.88222 0.88026 0.86528 1.90519 1.65151 1.14086 1.79239 1.41682 1.43277 1.10819 1.19123 1.20012 1.32397 0.94565 1.00264 0.88206 1.26544 0.96338 0.96385 1.01735 1.69559 1.39402 1.08279 1.36478 0.84633 0.77906 0.78325 0.75986 1.18657 1.19212 1.19089 0.90463 0.88840 0.93480 0.87069 0.90136 0.88246 0.86487 0.87562 0.92957 0.90996 0.88437 0.76734 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.02 71.98 0.65 -2.50 16 2 C 0.16 4.43 2.86 44.99 0.13 4.55 16 3 H 0.08 2.52 6.67 -2.39 -0.02 2.51 16 4 C -0.18 -4.01 5.22 -10.80 -0.06 -4.07 16 5 C -0.19 -4.37 10.18 30.59 0.31 -4.06 16 6 C -0.14 -2.30 9.73 30.59 0.30 -2.00 16 7 N -0.58 -20.71 2.76 -824.86 -2.28 -22.99 16 8 C 0.09 2.79 8.15 127.77 1.04 3.83 16 9 C 0.51 23.52 7.71 87.08 0.67 24.19 16 10 O -0.57 -28.42 15.82 -3.54 -0.06 -28.47 16 11 C 0.39 20.50 7.63 87.08 0.66 21.16 16 12 O -0.60 -32.17 12.93 -3.74 -0.05 -32.22 16 13 N -0.51 -28.87 5.24 -308.87 -1.62 -30.49 16 14 C -0.34 -19.47 9.67 84.35 0.82 -18.65 16 15 H 0.10 5.79 7.15 -2.91 -0.02 5.77 16 16 C -0.01 -0.33 5.51 85.14 0.47 0.14 16 17 N -0.90 -49.12 13.03 21.77 0.28 -48.84 16 18 Si 1.01 41.14 29.56 68.60 2.03 43.17 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 22 H 0.08 1.38 6.66 -2.39 -0.02 1.37 16 23 H 0.09 1.48 7.29 -2.39 -0.02 1.46 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.11 2.48 7.49 -2.39 -0.02 2.46 16 26 H 0.08 2.05 8.05 -2.39 -0.02 2.03 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.11 1.53 7.61 -2.39 -0.02 1.51 16 30 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 31 H 0.07 2.69 5.95 -2.39 -0.01 2.68 16 32 H 0.10 2.19 6.44 -2.38 -0.02 2.17 16 33 H 0.40 22.78 7.36 -92.70 -0.68 22.09 16 34 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 Total: -1.00 -66.23 287.83 3.74 -62.49 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.44 Total: 34.73 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 4.99 Total: 22.61 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -3.61 Total: -102.31 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: -0.10 Total: -60.69 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -66.23 3.74 -62.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036785900.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.797 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds