Wall clock time and date at job start Mon Mar 30 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.59014 * 2 1 4 4 C 1.53194 * 109.70141 * 239.64321 * 2 1 3 5 5 C 1.53047 * 109.31255 * 185.51199 * 4 2 1 6 6 C 1.53036 * 109.54066 * 61.36127 * 5 4 2 7 7 C 1.53629 * 109.24339 * 298.51733 * 6 5 4 8 8 N 1.46920 * 108.54387 * 54.85330 * 7 6 5 9 9 C 1.34778 * 120.63267 * 126.37230 * 8 7 6 10 10 O 1.21436 * 120.00112 * 188.81736 * 9 8 7 11 11 C 1.48840 * 119.99495 * 8.81666 * 9 8 7 12 12 O 1.21499 * 119.99942 * 6.46922 * 11 9 8 13 13 N 1.34778 * 119.99539 * 186.47534 * 11 9 8 14 14 C 1.36114 * 119.99562 * 180.02562 * 13 11 9 15 15 H 1.08000 * 120.00568 * 359.97438 * 14 13 11 16 16 C 1.39588 * 119.99607 * 180.27456 * 14 13 11 17 17 N 1.31008 * 120.00321 * 359.72176 * 16 14 13 18 18 Si 1.86807 * 119.99771 * 179.72398 * 16 14 13 19 19 H 1.48499 * 109.47131 * 90.00013 * 18 16 14 20 20 H 1.48500 * 109.46873 * 210.00164 * 18 16 14 21 21 H 1.48501 * 109.47280 * 329.99685 * 18 16 14 22 22 H 1.09004 * 109.47009 * 302.15293 * 1 2 3 23 23 H 1.09003 * 109.47005 * 62.15413 * 1 2 3 24 24 H 1.08998 * 109.46942 * 182.15283 * 1 2 3 25 25 H 1.09009 * 109.49758 * 305.45708 * 4 2 1 26 26 H 1.08997 * 109.49834 * 65.55626 * 4 2 1 27 27 H 1.09001 * 109.45983 * 181.38653 * 5 4 2 28 28 H 1.09000 * 109.45775 * 301.34406 * 5 4 2 29 29 H 1.09004 * 109.49372 * 58.58801 * 6 5 4 30 30 H 1.08996 * 109.50115 * 178.68349 * 6 5 4 31 31 H 1.09000 * 109.73238 * 295.11565 * 7 6 5 32 32 H 1.08998 * 109.66291 * 174.54970 * 7 6 5 33 33 H 0.97002 * 119.99974 * 359.97438 * 13 11 9 34 34 H 0.96997 * 120.00345 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5706 -0.8445 -1.1674 6 6 3.9602 -1.6609 0.0670 7 6 3.4660 -0.9376 1.3291 8 7 2.0226 -0.6981 1.1953 9 6 1.1671 -1.1060 2.1536 10 8 -0.0308 -1.0483 1.9628 11 6 1.6907 -1.6271 3.4458 12 8 2.8811 -1.5760 3.6838 13 7 0.8443 -2.1556 4.3517 14 6 1.3230 -2.6316 5.5336 15 1 2.3811 -2.5863 5.7453 16 6 0.4472 -3.1843 6.4695 17 7 -0.8363 -3.2398 6.2127 18 14 1.1051 -3.8447 8.0884 19 1 1.1080 -2.7588 9.1014 20 1 0.2402 -4.9569 8.5573 21 1 2.4902 -4.3433 7.8932 22 1 -0.3633 0.5469 0.8701 23 1 -0.3633 0.4800 -0.9087 24 1 -0.3633 -1.0269 0.0386 25 1 1.6079 -1.7258 -1.2905 26 1 1.7688 -0.1673 -2.1365 27 1 3.9429 -1.3410 -2.0635 28 1 4.0072 0.1517 -1.0965 29 1 3.5036 -2.6489 0.0087 30 1 5.0446 -1.7626 0.1086 31 1 3.9861 0.0144 1.4352 32 1 3.6538 -1.5585 2.2050 33 1 -0.1061 -2.1960 4.1618 34 1 -1.4449 -3.6241 6.8629 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:53 Heat of formation + Delta-G solvation = -56.769114 kcal Electronic energy + Delta-G solvation = -17825.789913 eV Core-core repulsion = 14952.273867 eV Total energy + Delta-G solvation = -2873.516046 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20409 -37.84769 -36.74587 -34.41640 -32.44096 -32.24013 -31.38527 -27.39983 -25.78351 -24.36166 -23.01336 -21.49148 -20.28756 -18.82380 -17.97128 -16.46311 -15.81639 -15.15373 -15.13453 -14.61998 -14.34936 -14.02675 -13.81241 -13.47830 -13.05302 -12.95779 -12.25281 -12.15211 -11.96576 -11.76532 -11.42362 -11.20553 -10.83818 -10.80888 -10.67588 -10.50566 -10.43486 -10.40478 -9.74969 -9.36952 -8.27294 -8.12461 -7.72630 -6.69831 -4.02451 2.44691 3.13655 3.14208 3.19363 3.34887 4.02640 4.24242 4.77236 4.92936 4.98981 5.09414 5.17327 5.29705 5.47207 5.57119 5.70825 5.83912 5.91751 5.95249 6.01112 6.08999 6.12182 6.20169 6.39229 6.54244 6.66428 6.74561 7.12960 7.28991 7.71521 7.86621 8.33019 8.64067 8.94244 9.29617 9.82915 10.44567 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.041868 B = 0.006249 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.614059 B = 4479.438900 C = 4989.858614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.140 3.860 3 H 0.065 0.935 4 C -0.129 4.129 5 C -0.120 4.120 6 C -0.135 4.135 7 C 0.070 3.930 8 N -0.590 5.590 9 C 0.515 3.485 10 O -0.541 6.541 11 C 0.390 3.610 12 O -0.587 6.587 13 N -0.495 5.495 14 C -0.307 4.307 15 H 0.113 0.887 16 C 0.032 3.968 17 N -0.867 5.867 18 Si 0.939 3.061 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.264 1.264 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.155 0.845 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.868 3.389 -10.528 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 H 0.083 0.917 4 C -0.168 4.168 5 C -0.158 4.158 6 C -0.174 4.174 7 C -0.052 4.052 8 N -0.324 5.324 9 C 0.301 3.699 10 O -0.419 6.419 11 C 0.176 3.824 12 O -0.478 6.478 13 N -0.128 5.128 14 C -0.438 4.438 15 H 0.131 0.869 16 C -0.175 4.175 17 N -0.505 5.505 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.089 0.911 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.171 0.829 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.787 3.376 -10.370 11.910 hybrid contribution -0.252 -0.214 0.473 0.577 sum 4.535 3.161 -9.897 11.336 Atomic orbital electron populations 1.22222 0.92750 1.03996 1.00338 1.21281 0.95751 0.94803 0.84505 0.91688 1.21992 0.96070 1.01368 0.97339 1.21545 0.95679 1.00371 0.98183 1.22039 1.00774 0.99497 0.95050 1.23024 0.78642 1.02019 1.01481 1.47858 1.08103 1.57330 1.19156 1.20539 0.85930 0.78073 0.85323 1.90727 1.15743 1.55035 1.80393 1.19089 0.87211 0.89697 0.86433 1.90247 1.15062 1.64449 1.78025 1.41583 1.10486 1.46574 1.14120 1.19897 0.95962 1.35708 0.92187 0.86883 1.25599 0.94859 0.96571 1.00502 1.69478 1.02649 1.41498 1.36900 0.85719 0.79134 0.78510 0.80185 1.19871 1.20518 1.18865 0.91085 0.94490 0.90730 0.91543 0.91315 0.92266 0.92116 0.91851 0.91160 0.92660 0.82865 0.75962 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 7.60 37.16 0.28 -1.88 16 2 C 0.14 2.13 3.48 -67.60 -0.24 1.89 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -1.62 5.38 -26.61 -0.14 -1.77 16 5 C -0.12 -1.39 5.88 -26.69 -0.16 -1.55 16 6 C -0.14 -1.82 6.10 -26.39 -0.16 -1.98 16 7 C 0.07 1.17 6.00 -3.49 -0.02 1.15 16 8 N -0.59 -10.83 2.97 -165.69 -0.49 -11.32 16 9 C 0.51 11.34 7.62 -11.87 -0.09 11.25 16 10 O -0.54 -12.38 11.91 5.42 0.06 -12.32 16 11 C 0.39 9.70 7.67 -11.87 -0.09 9.61 16 12 O -0.59 -15.07 12.73 5.37 0.07 -15.00 16 13 N -0.49 -13.04 5.24 -11.59 -0.06 -13.11 16 14 C -0.31 -8.31 9.67 -15.15 -0.15 -8.45 16 15 H 0.11 3.11 7.15 -52.49 -0.38 2.73 16 16 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 17 N -0.87 -23.02 13.03 55.53 0.72 -22.29 16 18 Si 0.94 19.81 29.56 -169.99 -5.02 14.79 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 22 H 0.07 1.28 6.77 -51.93 -0.35 0.93 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 1.33 6.74 -51.93 -0.35 0.98 16 25 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.15 3.08 4.31 -54.87 -0.24 2.84 16 33 H 0.40 10.80 7.37 -40.82 -0.30 10.50 16 34 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 275.59 15.07 4.15 4.15 Total: -1.00 -28.29 275.59 -5.98 -34.27 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.55 Total: 11.85 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -0.86 Total: 8.98 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.17 Total: -46.72 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: 0.13 Total: -27.32 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.29 -5.98 -34.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.496 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds