Wall clock time and date at job start Mon Mar 30 2020 03:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.59014 * 2 1 4 4 C 1.53194 * 109.70141 * 239.64321 * 2 1 3 5 5 C 1.53047 * 109.31255 * 185.51199 * 4 2 1 6 6 C 1.53036 * 109.54066 * 61.36127 * 5 4 2 7 7 C 1.53629 * 109.24339 * 298.51733 * 6 5 4 8 8 N 1.46920 * 108.54387 * 54.85330 * 7 6 5 9 9 C 1.34778 * 120.63267 * 126.37230 * 8 7 6 10 10 O 1.21436 * 120.00112 * 188.81736 * 9 8 7 11 11 C 1.48840 * 119.99495 * 8.81666 * 9 8 7 12 12 O 1.21499 * 119.99942 * 6.46922 * 11 9 8 13 13 N 1.34778 * 119.99539 * 186.47534 * 11 9 8 14 14 C 1.36114 * 119.99562 * 180.02562 * 13 11 9 15 15 H 1.08000 * 120.00568 * 359.97438 * 14 13 11 16 16 C 1.39588 * 119.99607 * 180.27456 * 14 13 11 17 17 N 1.31008 * 120.00321 * 359.72176 * 16 14 13 18 18 Si 1.86807 * 119.99771 * 179.72398 * 16 14 13 19 19 H 1.48499 * 109.47131 * 90.00013 * 18 16 14 20 20 H 1.48500 * 109.46873 * 210.00164 * 18 16 14 21 21 H 1.48501 * 109.47280 * 329.99685 * 18 16 14 22 22 H 1.09004 * 109.47009 * 302.15293 * 1 2 3 23 23 H 1.09003 * 109.47005 * 62.15413 * 1 2 3 24 24 H 1.08998 * 109.46942 * 182.15283 * 1 2 3 25 25 H 1.09009 * 109.49758 * 305.45708 * 4 2 1 26 26 H 1.08997 * 109.49834 * 65.55626 * 4 2 1 27 27 H 1.09001 * 109.45983 * 181.38653 * 5 4 2 28 28 H 1.09000 * 109.45775 * 301.34406 * 5 4 2 29 29 H 1.09004 * 109.49372 * 58.58801 * 6 5 4 30 30 H 1.08996 * 109.50115 * 178.68349 * 6 5 4 31 31 H 1.09000 * 109.73238 * 295.11565 * 7 6 5 32 32 H 1.08998 * 109.66291 * 174.54970 * 7 6 5 33 33 H 0.97002 * 119.99974 * 359.97438 * 13 11 9 34 34 H 0.96997 * 120.00345 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5706 -0.8445 -1.1674 6 6 3.9602 -1.6609 0.0670 7 6 3.4660 -0.9376 1.3291 8 7 2.0226 -0.6981 1.1953 9 6 1.1671 -1.1060 2.1536 10 8 -0.0308 -1.0483 1.9628 11 6 1.6907 -1.6271 3.4458 12 8 2.8811 -1.5760 3.6838 13 7 0.8443 -2.1556 4.3517 14 6 1.3230 -2.6316 5.5336 15 1 2.3811 -2.5863 5.7453 16 6 0.4472 -3.1843 6.4695 17 7 -0.8363 -3.2398 6.2127 18 14 1.1051 -3.8447 8.0884 19 1 1.1080 -2.7588 9.1014 20 1 0.2402 -4.9569 8.5573 21 1 2.4902 -4.3433 7.8932 22 1 -0.3633 0.5469 0.8701 23 1 -0.3633 0.4800 -0.9087 24 1 -0.3633 -1.0269 0.0386 25 1 1.6079 -1.7258 -1.2905 26 1 1.7688 -0.1673 -2.1365 27 1 3.9429 -1.3410 -2.0635 28 1 4.0072 0.1517 -1.0965 29 1 3.5036 -2.6489 0.0087 30 1 5.0446 -1.7626 0.1086 31 1 3.9861 0.0144 1.4352 32 1 3.6538 -1.5585 2.2050 33 1 -0.1061 -2.1960 4.1618 34 1 -1.4449 -3.6241 6.8629 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037242498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:52 Heat of formation + Delta-G solvation = -75.851471 kcal Electronic energy + Delta-G solvation = -17826.617386 eV Core-core repulsion = 14952.273867 eV Total energy + Delta-G solvation = -2874.343519 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.83094 -39.61533 -38.32178 -36.35119 -33.86994 -33.54496 -33.28573 -28.74629 -27.63657 -25.80257 -24.54418 -22.86250 -21.59873 -20.64293 -19.78082 -18.21539 -17.42352 -16.87685 -16.77884 -16.22574 -15.82487 -15.53666 -15.12122 -14.98918 -14.65101 -14.35566 -13.86696 -13.67369 -13.49256 -13.18256 -13.00015 -12.67767 -12.54626 -12.12122 -12.05064 -11.94913 -11.78457 -11.66310 -11.52675 -10.96740 -10.26313 -9.62521 -9.46975 -8.65333 -6.10401 0.62472 1.41061 1.47313 1.55701 1.77808 2.27709 2.37273 3.10646 3.16164 3.79963 3.87609 3.99765 4.03172 4.15943 4.32024 4.40352 4.53695 4.76325 4.82711 4.97180 5.04036 5.05769 5.14411 5.19268 5.24042 5.31035 5.36310 5.48079 5.70255 5.73125 6.24195 6.36531 6.82125 7.01767 7.30518 7.81963 8.50096 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.041868 B = 0.006249 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.614059 B = 4479.438900 C = 4989.858614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.131 3.869 3 H 0.087 0.913 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.065 3.935 8 N -0.581 5.581 9 C 0.512 3.488 10 O -0.556 6.556 11 C 0.387 3.613 12 O -0.599 6.599 13 N -0.510 5.510 14 C -0.344 4.344 15 H 0.101 0.899 16 C -0.005 4.005 17 N -0.898 5.898 18 Si 1.010 2.990 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.262 1.262 22 H 0.043 0.957 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.399 0.601 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 3.962 -12.054 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.030 3.970 3 H 0.105 0.895 4 C -0.162 4.162 5 C -0.152 4.152 6 C -0.168 4.168 7 C -0.056 4.056 8 N -0.314 5.314 9 C 0.297 3.703 10 O -0.436 6.436 11 C 0.172 3.828 12 O -0.490 6.490 13 N -0.143 5.143 14 C -0.474 4.474 15 H 0.118 0.882 16 C -0.209 4.209 17 N -0.535 5.535 18 Si 0.831 3.169 19 H -0.190 1.190 20 H -0.192 1.192 21 H -0.187 1.187 22 H 0.062 0.938 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.234 0.766 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.962 3.964 -11.934 13.917 hybrid contribution -0.562 -0.318 0.820 1.044 sum 5.400 3.646 -11.114 12.883 Atomic orbital electron populations 1.22074 0.93464 1.02315 1.00879 1.21654 0.95316 0.95939 0.84119 0.89513 1.21986 0.96750 1.00693 0.96775 1.21544 0.94815 1.01046 0.97811 1.21999 1.01911 0.98606 0.94255 1.22967 0.77898 1.02527 1.02216 1.48006 1.08386 1.55947 1.19088 1.20099 0.86163 0.78851 0.85205 1.90738 1.16245 1.56026 1.80602 1.19799 0.87041 0.88587 0.87332 1.90270 1.15506 1.64354 1.78873 1.41681 1.10280 1.47753 1.14623 1.19991 0.95833 1.38135 0.93447 0.88159 1.26544 0.94895 0.95906 1.03580 1.69551 1.03725 1.41946 1.38317 0.84692 0.78562 0.78149 0.75497 1.19037 1.19225 1.18657 0.93784 0.90849 0.93269 0.92909 0.88047 0.89773 0.90554 0.93269 0.88949 0.91127 0.86310 0.76626 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 7.60 71.98 0.55 -3.44 16 2 C 0.13 3.69 3.48 44.98 0.16 3.84 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.12 -2.66 5.38 30.67 0.16 -2.49 16 5 C -0.11 -2.16 5.88 30.62 0.18 -1.98 16 6 C -0.13 -3.18 6.10 30.82 0.19 -2.99 16 7 C 0.07 2.12 6.00 86.51 0.52 2.64 16 8 N -0.58 -20.98 2.97 -796.44 -2.36 -23.34 16 9 C 0.51 23.13 7.62 87.08 0.66 23.79 16 10 O -0.56 -26.32 11.91 -3.51 -0.04 -26.36 16 11 C 0.39 20.00 7.67 87.08 0.67 20.67 16 12 O -0.60 -31.87 12.73 -3.71 -0.05 -31.92 16 13 N -0.51 -28.20 5.24 -308.87 -1.62 -29.82 16 14 C -0.34 -19.36 9.67 84.35 0.82 -18.55 16 15 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 16 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 17 N -0.90 -48.59 13.03 21.76 0.28 -48.31 16 18 Si 1.01 40.80 29.56 68.60 2.03 42.83 16 19 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H 0.04 1.57 6.77 -2.38 -0.02 1.56 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.75 6.74 -2.39 -0.02 1.73 16 25 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.12 4.84 4.31 -49.02 -0.21 4.63 16 33 H 0.40 22.45 7.37 -92.71 -0.68 21.77 16 34 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 Total: -1.00 -63.60 275.59 2.84 -60.76 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.23 Total: 34.47 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 4.37 Total: 21.70 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -3.70 Total: -101.47 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -0.09 Total: -58.28 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -63.60 2.84 -60.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.093 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds