Wall clock time and date at job start Mon Mar 30 2020 03:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.70169 * 2 1 4 4 C 1.53191 * 109.58967 * 120.36196 * 2 1 3 5 5 C 1.53033 * 109.31423 * 174.42080 * 4 2 1 6 6 C 1.53040 * 109.54106 * 298.63523 * 5 4 2 7 7 C 1.53191 * 109.31226 * 61.35968 * 6 5 4 8 8 N 1.46918 * 108.77883 * 305.36934 * 7 6 5 9 9 C 1.34781 * 120.63312 * 233.88271 * 8 7 6 10 10 O 1.21443 * 119.99834 * 171.80920 * 9 8 7 11 11 C 1.48828 * 119.99624 * 351.80414 * 9 8 7 12 12 O 1.21495 * 120.00443 * 353.41002 * 11 9 8 13 13 N 1.34784 * 119.99740 * 173.40534 * 11 9 8 14 14 C 1.36115 * 119.99634 * 180.02562 * 13 11 9 15 15 H 1.08002 * 120.00627 * 359.97438 * 14 13 11 16 16 C 1.39587 * 119.99710 * 180.02562 * 14 13 11 17 17 N 1.31014 * 120.00005 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00126 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46753 * 90.00221 * 18 16 14 20 20 H 1.48503 * 109.47177 * 210.00363 * 18 16 14 21 21 H 1.48505 * 109.47153 * 330.00476 * 18 16 14 22 22 H 1.09004 * 109.47319 * 173.62566 * 1 2 3 23 23 H 1.09000 * 109.46999 * 293.62016 * 1 2 3 24 24 H 1.09000 * 109.47752 * 53.61790 * 1 2 3 25 25 H 1.09005 * 109.49636 * 294.37177 * 4 2 1 26 26 H 1.08999 * 109.49659 * 54.46748 * 4 2 1 27 27 H 1.09006 * 109.45722 * 58.65250 * 5 4 2 28 28 H 1.08999 * 109.46116 * 178.62114 * 5 4 2 29 29 H 1.09000 * 109.50233 * 181.31662 * 6 5 4 30 30 H 1.09005 * 109.49457 * 301.38015 * 6 5 4 31 31 H 1.09003 * 109.58899 * 185.57773 * 7 6 5 32 32 H 1.08997 * 109.58636 * 65.15922 * 7 6 5 33 33 H 0.96995 * 119.99828 * 0.02562 * 13 11 9 34 34 H 0.97002 * 119.99644 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1700 6 6 3.9569 -1.6657 -0.0637 7 6 3.4649 -0.9469 -1.3239 8 7 2.0225 -0.6995 -1.1946 9 6 1.1667 -1.1113 -2.1509 10 8 -0.0314 -1.0358 -1.9670 11 6 1.6899 -1.6584 -3.4322 12 8 2.8817 -1.6239 -3.6660 13 7 0.8416 -2.1924 -4.3333 14 6 1.3203 -2.6933 -5.5050 15 1 2.3797 -2.6625 -5.7128 16 6 0.4417 -3.2458 -6.4384 17 7 0.9024 -3.7284 -7.5659 18 14 -1.3907 -3.2985 -6.0793 19 1 -2.0297 -2.0564 -6.5833 20 1 -1.9940 -4.4751 -6.7554 21 1 -1.6051 -3.4060 -4.6137 22 1 -0.3634 -1.0213 -0.1141 23 1 -0.3633 0.4118 0.9416 24 1 -0.3634 0.6096 -0.8273 25 1 1.7661 -0.1670 2.1368 26 1 1.6030 -1.7254 1.2911 27 1 4.0061 0.1473 1.0992 28 1 3.9378 -1.3451 2.0666 29 1 5.0412 -1.7696 -0.1040 30 1 3.4988 -2.6530 -0.0053 31 1 3.6517 -1.5715 -2.1974 32 1 3.9902 0.0021 -1.4318 33 1 -0.1098 -2.2198 -4.1468 34 1 0.2918 -4.1120 -8.2147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242500.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:57 Heat of formation + Delta-G solvation = -49.094923 kcal Electronic energy + Delta-G solvation = -17892.964596 eV Core-core repulsion = 15019.781328 eV Total energy + Delta-G solvation = -2873.183268 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.35906 -38.02816 -36.89178 -34.47995 -32.54520 -32.34789 -31.83561 -27.52089 -25.89890 -24.39683 -22.98620 -21.48831 -20.28794 -19.32747 -18.18231 -16.48825 -15.94982 -15.30661 -15.22211 -14.81844 -14.45469 -14.00452 -13.64523 -13.55384 -13.16446 -12.96988 -12.53469 -12.38881 -12.22452 -12.00080 -11.52119 -11.29261 -10.92163 -10.87169 -10.75723 -10.67100 -10.48976 -10.19966 -9.82220 -9.44930 -8.46034 -8.24538 -7.85602 -6.62333 -4.03850 2.28669 3.02311 3.05080 3.08583 3.20140 3.92788 4.10173 4.55388 4.85918 4.89827 5.00189 5.09327 5.23136 5.39230 5.47977 5.60628 5.65745 5.78554 5.87142 5.91268 6.02925 6.06319 6.13857 6.31164 6.46638 6.56872 6.64990 7.02360 7.24352 7.69363 7.88882 8.22946 8.51889 8.72747 9.16308 9.59193 10.47479 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037732 B = 0.006955 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.904957 B = 4025.144189 C = 4586.693125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.139 3.861 3 H 0.067 0.933 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.135 4.135 7 C 0.066 3.934 8 N -0.587 5.587 9 C 0.515 3.485 10 O -0.546 6.546 11 C 0.401 3.599 12 O -0.569 6.569 13 N -0.523 5.523 14 C -0.309 4.309 15 H 0.128 0.872 16 C 0.054 3.946 17 N -0.848 5.848 18 Si 0.876 3.124 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.260 1.260 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.057 0.943 33 H 0.384 0.616 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 4.723 14.293 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.168 4.168 5 C -0.158 4.158 6 C -0.174 4.174 7 C -0.055 4.055 8 N -0.321 5.321 9 C 0.302 3.698 10 O -0.424 6.424 11 C 0.186 3.814 12 O -0.457 6.457 13 N -0.158 5.158 14 C -0.439 4.439 15 H 0.146 0.854 16 C -0.155 4.155 17 N -0.484 5.484 18 Si 0.700 3.300 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.185 1.185 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.076 0.924 33 H 0.219 0.781 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.908 4.684 14.018 14.808 hybrid contribution -1.290 -0.008 0.251 1.314 sum -0.381 4.676 14.269 15.020 Atomic orbital electron populations 1.22249 0.92775 1.04563 0.99931 1.21311 0.95754 0.94896 0.84425 0.91507 1.21990 0.96149 1.01356 0.97274 1.21551 0.95613 1.00426 0.98241 1.21962 1.00961 0.99491 0.94939 1.22999 0.78485 1.02271 1.01746 1.47857 1.08231 1.56743 1.19225 1.20477 0.85929 0.78217 0.85204 1.90715 1.15737 1.55915 1.80070 1.18972 0.87099 0.89085 0.86197 1.90274 1.14730 1.63407 1.77287 1.41847 1.09073 1.48745 1.16164 1.19577 0.97717 1.35099 0.91508 0.85398 1.25241 0.99352 0.95868 0.95045 1.69441 1.36615 1.35211 1.07161 0.86678 0.84083 0.79497 0.79704 1.18861 1.19514 1.18461 0.90176 0.94381 0.91543 0.91230 0.91532 0.92051 0.92176 0.90974 0.91827 0.82720 0.92444 0.78114 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.60 37.16 0.28 -1.78 16 2 C 0.14 2.00 3.49 -67.60 -0.24 1.76 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.53 5.37 -26.62 -0.14 -1.67 16 5 C -0.12 -1.33 5.88 -26.69 -0.16 -1.49 16 6 C -0.14 -1.75 6.08 -26.61 -0.16 -1.91 16 7 C 0.07 1.07 6.00 -3.72 -0.02 1.05 16 8 N -0.59 -10.26 2.97 -165.96 -0.49 -10.75 16 9 C 0.52 10.76 7.63 -11.88 -0.09 10.67 16 10 O -0.55 -11.67 11.90 5.42 0.06 -11.61 16 11 C 0.40 9.57 7.67 -11.87 -0.09 9.48 16 12 O -0.57 -14.37 12.71 5.37 0.07 -14.30 16 13 N -0.52 -13.01 5.05 -11.59 -0.06 -13.07 16 14 C -0.31 -8.49 10.16 -15.15 -0.15 -8.64 16 15 H 0.13 3.89 7.37 -52.49 -0.39 3.50 16 16 C 0.05 1.41 5.51 -17.40 -0.10 1.32 16 17 N -0.85 -23.30 13.94 55.53 0.77 -22.53 16 18 Si 0.88 19.18 27.74 -169.99 -4.72 14.46 16 19 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.51 6.53 56.52 0.37 -5.14 16 22 H 0.08 1.36 6.43 -51.93 -0.33 1.03 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 1.10 7.05 -51.93 -0.37 0.74 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.16 3.02 4.26 -55.13 -0.23 2.79 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.38 9.02 5.24 -40.82 -0.21 8.80 16 34 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 LS Contribution 272.39 15.07 4.10 4.10 Total: -1.00 -28.62 272.39 -5.63 -34.25 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.51 Total: 10.65 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -0.87 Total: 8.78 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.22 Total: -46.35 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: 0.13 Total: -25.90 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.72 Total: 14.46 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.62 -5.63 -34.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242500.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.843 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds