Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 H 1.08994 * 109.87617 * 303.77716 * 3 2 1 5 5 C 1.54323 * 109.88544 * 64.79595 * 3 2 1 6 6 C 1.55153 * 102.94481 * 141.76477 * 5 3 2 7 7 C 1.54904 * 101.58177 * 324.49829 * 6 5 3 8 8 N 1.47025 * 110.01178 * 182.67836 * 3 2 1 9 9 C 1.34777 * 125.64440 * 61.52690 * 8 3 2 10 10 O 1.21432 * 120.00537 * 5.10497 * 9 8 3 11 11 C 1.48835 * 119.99548 * 185.10822 * 9 8 3 12 12 O 1.21497 * 120.00422 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99548 * 179.97438 * 11 9 8 14 14 C 1.36123 * 119.99980 * 179.97438 * 13 11 9 15 15 H 1.07999 * 119.99682 * 359.97438 * 14 13 11 16 16 C 1.39581 * 120.00463 * 179.97438 * 14 13 11 17 17 N 1.31012 * 120.00162 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99737 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46930 * 89.99971 * 18 16 14 20 20 H 1.48502 * 109.46761 * 210.00027 * 18 16 14 21 21 H 1.48501 * 109.47112 * 329.99897 * 18 16 14 22 22 H 1.08997 * 109.47077 * 294.43241 * 1 2 3 23 23 H 1.08994 * 109.47204 * 54.43347 * 1 2 3 24 24 H 1.09001 * 109.47199 * 174.43596 * 1 2 3 25 25 H 1.09004 * 109.47206 * 239.99627 * 2 1 3 26 26 H 1.09002 * 109.47236 * 120.00185 * 2 1 3 27 27 H 1.09003 * 110.71943 * 260.13165 * 5 3 2 28 28 H 1.09001 * 110.71647 * 23.21919 * 5 3 2 29 29 H 1.08997 * 111.00376 * 82.57725 * 6 5 3 30 30 H 1.09001 * 111.00174 * 206.38480 * 6 5 3 31 31 H 1.08998 * 110.36726 * 155.84753 * 7 6 5 32 32 H 1.09003 * 110.36798 * 278.06074 * 7 6 5 33 33 H 0.96997 * 120.00457 * 359.97438 * 13 11 9 34 34 H 0.97000 * 119.99841 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6263 1.9818 -0.8520 5 6 1.6323 2.1433 1.3131 6 6 2.8734 3.0146 1.6418 7 6 4.0291 2.1070 1.1519 8 7 3.5088 1.4568 -0.0646 9 6 4.2557 0.9573 -1.0691 10 8 3.7182 0.5244 -2.0682 11 6 5.7394 0.9365 -0.9538 12 8 6.2773 1.3700 0.0456 13 7 6.4863 0.4366 -1.9582 14 6 7.8434 0.4179 -1.8530 15 1 8.3215 0.8041 -0.9649 16 6 8.6170 -0.1003 -2.8929 17 7 9.9230 -0.1186 -2.7914 18 14 7.7899 -0.7689 -4.4287 19 1 7.6331 0.3238 -5.4219 20 1 8.6255 -1.8502 -5.0099 21 1 6.4537 -1.3117 -4.0749 22 1 -0.3633 0.4251 0.9356 23 1 -0.3633 0.5977 -0.8359 24 1 -0.3634 -1.0228 -0.0996 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.7523 2.7679 1.1597 28 1 1.4517 1.4118 2.1007 29 1 2.8506 3.9522 1.0865 30 1 2.9482 3.1994 2.7134 31 1 4.9081 2.7065 0.9152 32 1 4.2723 1.3608 1.9084 33 1 6.0570 0.0901 -2.7559 34 1 10.4606 -0.4784 -3.5142 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037915092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = -72.316648 kcal Electronic energy + Delta-G solvation = -17570.388684 eV Core-core repulsion = 14696.198446 eV Total energy + Delta-G solvation = -2874.190238 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.10759 -38.14106 -36.81944 -34.36187 -33.29993 -31.94517 -31.19232 -27.76854 -26.12662 -24.21215 -22.60917 -21.61717 -20.22423 -19.20379 -18.30103 -16.51897 -16.43524 -15.68465 -15.03774 -14.70492 -14.41517 -13.94388 -13.52604 -13.25912 -12.97602 -12.91330 -12.81186 -12.44154 -12.14173 -12.02271 -11.57586 -11.28400 -11.21463 -11.10302 -10.68796 -10.65552 -10.56386 -10.30566 -10.05089 -9.75143 -8.43762 -8.32711 -8.27968 -6.57511 -3.99074 2.32015 3.04347 3.07976 3.11180 3.16662 3.96780 4.14749 4.43717 4.67576 4.79271 4.87752 5.13981 5.17511 5.19256 5.32231 5.44657 5.54217 5.64136 5.71251 5.74138 5.90412 5.99139 6.00815 6.23007 6.23336 6.29866 6.34941 6.69729 7.28363 7.74513 7.90183 8.21616 8.52195 8.76146 9.20894 9.63270 10.52669 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036182 B = 0.006489 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.689913 B = 4313.931098 C = 4932.693430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.136 3.864 4 H 0.074 0.926 5 C -0.126 4.126 6 C -0.139 4.139 7 C 0.108 3.892 8 N -0.597 5.597 9 C 0.528 3.472 10 O -0.550 6.550 11 C 0.408 3.592 12 O -0.573 6.573 13 N -0.529 5.529 14 C -0.308 4.308 15 H 0.127 0.873 16 C 0.053 3.947 17 N -0.851 5.851 18 Si 0.875 3.125 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.260 1.260 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.383 0.617 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.864 2.670 5.483 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.033 3.967 4 H 0.092 0.908 5 C -0.164 4.164 6 C -0.177 4.177 7 C -0.014 4.014 8 N -0.332 5.332 9 C 0.315 3.685 10 O -0.428 6.428 11 C 0.193 3.807 12 O -0.459 6.459 13 N -0.166 5.166 14 C -0.438 4.438 15 H 0.145 0.855 16 C -0.155 4.155 17 N -0.488 5.488 18 Si 0.699 3.301 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.185 1.185 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.218 0.782 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.519 2.636 5.441 16.655 hybrid contribution -0.432 -0.609 -1.222 1.432 sum -15.951 2.027 4.218 16.623 Atomic orbital electron populations 1.21700 0.95287 1.01681 1.01604 1.21899 0.95909 0.96521 1.03232 1.21631 0.80511 0.96367 0.98196 0.90843 1.22711 0.98250 0.98944 0.96515 1.22885 0.94668 0.98460 1.01668 1.22459 0.97167 0.95715 0.86095 1.48233 1.05944 1.58424 1.20574 1.20373 0.89004 0.77501 0.81643 1.90661 1.74641 1.47740 1.29719 1.18781 0.86040 0.89456 0.86460 1.90581 1.72529 1.52164 1.30601 1.41815 1.07374 1.50883 1.16503 1.19543 0.78846 1.39003 1.06371 0.85513 1.25213 0.95320 0.96622 0.98365 1.69439 1.04195 1.41721 1.33456 0.86695 0.80196 0.80156 0.83020 1.18912 1.19541 1.18460 0.92727 0.92679 0.92695 0.90606 0.91829 0.90385 0.90503 0.90819 0.89984 0.88181 0.91421 0.78203 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.64 37.16 0.36 -1.10 16 2 C -0.14 -1.83 5.38 -26.74 -0.14 -1.97 16 3 C 0.14 1.89 2.89 -66.95 -0.19 1.70 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 5 C -0.13 -1.29 5.60 -24.90 -0.14 -1.43 16 6 C -0.14 -1.52 7.08 -24.59 -0.17 -1.70 16 7 C 0.11 1.68 5.88 -2.53 -0.01 1.67 16 8 N -0.60 -10.54 3.07 -163.76 -0.50 -11.04 16 9 C 0.53 11.43 7.63 -11.87 -0.09 11.34 16 10 O -0.55 -12.51 15.66 5.42 0.08 -12.43 16 11 C 0.41 10.08 7.78 -11.87 -0.09 9.98 16 12 O -0.57 -14.97 13.46 5.37 0.07 -14.90 16 13 N -0.53 -13.58 5.06 -11.59 -0.06 -13.63 16 14 C -0.31 -8.66 10.16 -15.15 -0.15 -8.82 16 15 H 0.13 3.95 7.36 -52.49 -0.39 3.56 16 16 C 0.05 1.42 5.51 -17.40 -0.10 1.33 16 17 N -0.85 -23.82 13.94 55.53 0.77 -23.04 16 18 Si 0.87 19.60 27.74 -169.99 -4.72 14.88 16 19 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.26 -5.68 6.53 56.52 0.37 -5.31 16 22 H 0.05 0.46 7.55 -51.93 -0.39 0.07 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 1.23 6.95 -51.93 -0.36 0.87 16 26 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.72 7.77 -51.93 -0.40 0.31 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.78 6.48 -51.93 -0.34 1.45 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.38 9.31 5.22 -40.82 -0.21 9.10 16 34 H 0.28 7.19 8.30 -40.82 -0.34 6.85 16 LS Contribution 281.93 15.07 4.25 4.25 Total: -1.00 -30.66 281.93 -5.48 -36.13 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.64 Total: 8.78 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -0.74 Total: 11.00 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.21 Total: -47.72 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: 0.16 Total: -27.33 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.72 Total: 14.88 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.66 -5.48 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037915092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.186 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds