Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 H 1.08994 * 109.87617 * 303.77716 * 3 2 1 5 5 C 1.54323 * 109.88544 * 64.79595 * 3 2 1 6 6 C 1.55153 * 102.94481 * 141.76477 * 5 3 2 7 7 C 1.54904 * 101.58177 * 324.49829 * 6 5 3 8 8 N 1.47025 * 110.01178 * 182.67836 * 3 2 1 9 9 C 1.34777 * 125.64440 * 61.52690 * 8 3 2 10 10 O 1.21432 * 120.00537 * 5.10497 * 9 8 3 11 11 C 1.48835 * 119.99548 * 185.10822 * 9 8 3 12 12 O 1.21497 * 120.00422 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99548 * 179.97438 * 11 9 8 14 14 C 1.36123 * 119.99980 * 179.97438 * 13 11 9 15 15 H 1.07999 * 119.99682 * 359.97438 * 14 13 11 16 16 C 1.39581 * 120.00463 * 179.97438 * 14 13 11 17 17 N 1.31012 * 120.00162 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99737 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46930 * 89.99971 * 18 16 14 20 20 H 1.48502 * 109.46761 * 210.00027 * 18 16 14 21 21 H 1.48501 * 109.47112 * 329.99897 * 18 16 14 22 22 H 1.08997 * 109.47077 * 294.43241 * 1 2 3 23 23 H 1.08994 * 109.47204 * 54.43347 * 1 2 3 24 24 H 1.09001 * 109.47199 * 174.43596 * 1 2 3 25 25 H 1.09004 * 109.47206 * 239.99627 * 2 1 3 26 26 H 1.09002 * 109.47236 * 120.00185 * 2 1 3 27 27 H 1.09003 * 110.71943 * 260.13165 * 5 3 2 28 28 H 1.09001 * 110.71647 * 23.21919 * 5 3 2 29 29 H 1.08997 * 111.00376 * 82.57725 * 6 5 3 30 30 H 1.09001 * 111.00174 * 206.38480 * 6 5 3 31 31 H 1.08998 * 110.36726 * 155.84753 * 7 6 5 32 32 H 1.09003 * 110.36798 * 278.06074 * 7 6 5 33 33 H 0.96997 * 120.00457 * 359.97438 * 13 11 9 34 34 H 0.97000 * 119.99841 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6263 1.9818 -0.8520 5 6 1.6323 2.1433 1.3131 6 6 2.8734 3.0146 1.6418 7 6 4.0291 2.1070 1.1519 8 7 3.5088 1.4568 -0.0646 9 6 4.2557 0.9573 -1.0691 10 8 3.7182 0.5244 -2.0682 11 6 5.7394 0.9365 -0.9538 12 8 6.2773 1.3700 0.0456 13 7 6.4863 0.4366 -1.9582 14 6 7.8434 0.4179 -1.8530 15 1 8.3215 0.8041 -0.9649 16 6 8.6170 -0.1003 -2.8929 17 7 9.9230 -0.1186 -2.7914 18 14 7.7899 -0.7689 -4.4287 19 1 7.6331 0.3238 -5.4219 20 1 8.6255 -1.8502 -5.0099 21 1 6.4537 -1.3117 -4.0749 22 1 -0.3633 0.4251 0.9356 23 1 -0.3633 0.5977 -0.8359 24 1 -0.3634 -1.0228 -0.0996 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.7523 2.7679 1.1597 28 1 1.4517 1.4118 2.1007 29 1 2.8506 3.9522 1.0865 30 1 2.9482 3.1994 2.7134 31 1 4.9081 2.7065 0.9152 32 1 4.2723 1.3608 1.9084 33 1 6.0570 0.0901 -2.7559 34 1 10.4606 -0.4784 -3.5142 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037915092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = -94.151643 kcal Electronic energy + Delta-G solvation = -17571.335520 eV Core-core repulsion = 14696.198446 eV Total energy + Delta-G solvation = -2875.137074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69948 -39.81725 -38.49439 -36.36687 -34.43747 -33.97670 -32.47981 -28.83121 -28.04655 -25.71085 -23.87507 -22.87728 -21.62093 -21.09980 -19.94521 -18.23348 -18.04296 -17.27103 -16.86561 -16.17741 -15.72463 -15.49388 -15.02457 -14.68839 -14.65674 -14.45603 -14.27630 -13.92950 -13.36908 -13.11485 -12.95576 -12.60940 -12.58556 -12.50719 -12.11675 -12.08359 -11.87749 -11.73213 -11.54872 -11.41321 -10.49363 -10.20544 -9.77720 -8.64327 -6.17818 0.49539 1.25997 1.29894 1.35909 1.60264 2.07793 2.24770 2.87086 3.04295 3.59259 3.64561 3.81832 3.89595 4.19703 4.24026 4.37060 4.50170 4.59853 4.77736 4.94898 4.96286 5.02646 5.11222 5.15401 5.20968 5.25586 5.28623 5.37717 5.49482 5.72132 6.14971 6.28890 6.54342 6.83099 7.13131 7.60392 8.50287 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036182 B = 0.006489 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.689913 B = 4313.931098 C = 4932.693430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.125 3.875 4 H 0.073 0.927 5 C -0.113 4.113 6 C -0.124 4.124 7 C 0.097 3.903 8 N -0.590 5.590 9 C 0.529 3.471 10 O -0.564 6.564 11 C 0.408 3.592 12 O -0.592 6.592 13 N -0.535 5.535 14 C -0.338 4.338 15 H 0.079 0.921 16 C 0.013 3.987 17 N -0.892 5.892 18 Si 0.946 3.054 19 H -0.252 1.252 20 H -0.255 1.255 21 H -0.252 1.252 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.391 0.609 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.083 2.891 5.640 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.023 3.977 4 H 0.091 0.909 5 C -0.150 4.150 6 C -0.162 4.162 7 C -0.025 4.025 8 N -0.323 5.323 9 C 0.313 3.687 10 O -0.444 6.444 11 C 0.192 3.808 12 O -0.478 6.478 13 N -0.173 5.173 14 C -0.467 4.467 15 H 0.097 0.903 16 C -0.192 4.192 17 N -0.529 5.529 18 Si 0.765 3.235 19 H -0.176 1.176 20 H -0.178 1.178 21 H -0.176 1.176 22 H 0.098 0.902 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.751 2.876 5.637 19.790 hybrid contribution 0.543 -0.603 -1.100 1.367 sum -18.208 2.273 4.538 18.902 Atomic orbital electron populations 1.21659 0.92297 1.02434 1.03096 1.21870 0.98446 0.95581 1.01469 1.22064 0.77554 0.97423 1.00677 0.90898 1.22759 0.98746 0.99112 0.94408 1.22863 0.92450 0.97517 1.03380 1.22624 0.98483 0.96180 0.85236 1.48405 1.07930 1.56217 1.19703 1.19679 0.87559 0.78628 0.82811 1.90648 1.74321 1.48890 1.30508 1.19589 0.87860 0.87628 0.85682 1.90567 1.73756 1.52226 1.31287 1.41702 1.06525 1.51854 1.17245 1.19160 0.80203 1.41428 1.05920 0.90309 1.26030 0.95756 0.96025 1.01423 1.69540 1.05765 1.42492 1.35117 0.85628 0.79461 0.80048 0.78315 1.17572 1.17839 1.17601 0.90187 0.92394 0.92199 0.94164 0.91872 0.87054 0.88831 0.90243 0.87006 0.91182 0.91588 0.77293 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.64 71.98 0.69 -1.59 16 2 C -0.14 -3.34 5.38 30.59 0.16 -3.18 16 3 C 0.12 3.15 2.89 45.34 0.13 3.28 16 4 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.11 -1.79 5.60 31.78 0.18 -1.61 16 6 C -0.12 -2.29 7.08 31.98 0.23 -2.06 16 7 C 0.10 2.93 5.88 86.85 0.51 3.44 16 8 N -0.59 -20.41 3.07 -790.34 -2.43 -22.83 16 9 C 0.53 23.11 7.63 87.08 0.66 23.77 16 10 O -0.56 -25.70 15.66 -3.50 -0.05 -25.76 16 11 C 0.41 20.84 7.78 87.08 0.68 21.51 16 12 O -0.59 -32.42 13.46 -3.71 -0.05 -32.47 16 13 N -0.53 -28.34 5.06 -308.87 -1.56 -29.90 16 14 C -0.34 -19.94 10.16 84.35 0.86 -19.09 16 15 H 0.08 5.30 7.36 -2.91 -0.02 5.28 16 16 C 0.01 0.70 5.51 85.14 0.47 1.17 16 17 N -0.89 -51.35 13.94 21.76 0.30 -51.04 16 18 Si 0.95 40.39 27.74 68.60 1.90 42.29 16 19 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.25 -10.35 6.53 99.48 0.65 -9.70 16 22 H 0.08 0.95 7.55 -2.39 -0.02 0.93 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.04 1.28 6.95 -2.39 -0.02 1.26 16 26 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.25 7.77 -2.39 -0.02 1.23 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.55 6.48 -2.39 -0.02 2.54 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.39 19.18 5.22 -92.71 -0.48 18.70 16 34 H 0.29 15.07 8.30 -92.71 -0.77 14.30 16 Total: -1.00 -70.54 281.93 3.25 -67.29 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.56 Total: 26.78 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 4.57 Total: 25.65 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -3.68 Total: -103.78 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -0.10 Total: -58.23 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.90 Total: 42.29 kcal Total: -70.54 3.25 -67.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037915092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.865 kcal (2) G-P(sol) polarization free energy of solvation -70.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds