Wall clock time and date at job start Mon Mar 30 2020 03:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.58509 * 2 1 4 4 C 1.53193 * 109.58534 * 239.57773 * 2 1 3 5 5 C 1.53037 * 109.31191 * 185.57764 * 4 2 1 6 6 C 1.53042 * 109.53736 * 61.36280 * 5 4 2 7 7 H 1.09004 * 109.49705 * 58.58963 * 6 5 4 8 8 C 1.50701 * 109.52590 * 178.66457 * 6 5 4 9 9 N 1.34770 * 120.00256 * 179.85570 * 8 6 5 10 10 O 1.21288 * 119.99559 * 359.85995 * 8 6 5 11 11 C 1.53187 * 109.31511 * 298.63220 * 6 5 4 12 12 N 1.46925 * 109.58470 * 120.28685 * 2 1 3 13 13 C 1.34772 * 120.63271 * 353.37432 * 12 2 1 14 14 O 1.21679 * 119.99984 * 4.95117 * 13 12 2 15 15 C 1.46381 * 119.99789 * 184.95414 * 13 12 2 16 16 H 1.07998 * 119.99938 * 8.97886 * 15 13 12 17 17 C 1.40049 * 119.99569 * 188.97506 * 15 13 12 18 18 N 1.30671 * 120.00337 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99633 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47024 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47132 * 119.99839 * 19 17 15 22 22 H 1.48502 * 109.46935 * 239.99874 * 19 17 15 23 23 H 1.09000 * 109.47046 * 303.33947 * 1 2 3 24 24 H 1.08997 * 109.47360 * 183.34162 * 1 2 3 25 25 H 1.09003 * 109.47430 * 63.33597 * 1 2 3 26 26 H 1.08999 * 109.49555 * 305.52689 * 4 2 1 27 27 H 1.08995 * 109.49761 * 65.62037 * 4 2 1 28 28 H 1.08992 * 109.46484 * 301.34297 * 5 4 2 29 29 H 1.09001 * 109.45869 * 181.38424 * 5 4 2 30 30 H 0.96994 * 120.00253 * 359.97438 * 9 8 6 31 31 H 0.97001 * 120.00091 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.58648 * 294.85295 * 11 6 5 33 33 H 1.08999 * 109.58759 * 174.42232 * 11 6 5 34 34 H 0.96994 * 119.99921 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7308 -1.2446 5 6 3.5674 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0654 7 1 3.4982 -2.6528 0.0084 8 6 5.4559 -1.8100 0.1216 9 7 6.0298 -2.4929 1.1318 10 8 6.1458 -1.3115 -0.7425 11 6 3.4651 -0.9454 1.3248 12 7 2.0225 -0.6981 1.1953 13 6 1.1674 -1.1036 2.1549 14 8 -0.0319 -0.9737 1.9956 15 6 1.6815 -1.7002 3.3888 16 1 2.7414 -1.6844 3.5954 17 6 0.7988 -2.2913 4.3014 18 7 -0.4837 -2.3099 4.0516 19 14 1.4548 -3.0520 5.8763 20 1 2.9314 -2.9008 5.9214 21 1 0.8505 -2.3659 7.0465 22 1 1.1040 -4.4945 5.9128 23 1 -0.3633 0.5648 0.8585 24 1 -0.3634 -1.0259 0.0599 25 1 -0.3634 0.4612 -0.9184 26 1 1.6029 -1.7268 -1.2893 27 1 1.7659 -0.1694 -2.1366 28 1 4.0061 0.1460 -1.0996 29 1 3.9377 -1.3473 -2.0653 30 1 5.4781 -2.8912 1.8230 31 1 6.9947 -2.5854 1.1681 32 1 3.9903 0.0037 1.4316 33 1 3.6518 -1.5691 2.1990 34 1 -1.0949 -2.7197 4.6835 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044413075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:20 Heat of formation + Delta-G solvation = -99.218090 kcal Electronic energy + Delta-G solvation = -18066.752646 eV Core-core repulsion = 15191.395874 eV Total energy + Delta-G solvation = -2875.356772 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24880 -39.91875 -37.36272 -34.94042 -34.56170 -33.42894 -33.14071 -28.92433 -27.90545 -25.47367 -23.84349 -22.82398 -20.94431 -20.46202 -18.54889 -18.14078 -17.58936 -17.27205 -16.69922 -16.00324 -15.74177 -15.54323 -14.95101 -14.77411 -14.51352 -14.31628 -13.49631 -13.36188 -13.08698 -12.92494 -12.85102 -12.74797 -12.42847 -12.00530 -11.90148 -11.81453 -11.69367 -11.43852 -10.92509 -10.89030 -10.60163 -9.19107 -8.98050 -8.16513 -6.76014 1.43012 1.44955 1.60402 1.61900 2.26506 2.53380 2.58782 2.89475 3.62765 3.75886 3.89841 3.99788 4.09119 4.30978 4.37841 4.52024 4.62214 4.78967 4.86589 4.93616 4.94266 5.06635 5.13502 5.26019 5.42580 5.49869 5.65001 5.80180 5.96109 6.20451 6.44887 6.48211 6.95469 7.36444 7.49605 8.56105 8.74912 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.021571 B = 0.009458 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.750990 B = 2959.598834 C = 4126.805440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.141 3.859 3 H 0.059 0.941 4 C -0.118 4.118 5 C -0.089 4.089 6 C -0.120 4.120 7 H 0.101 0.899 8 C 0.533 3.467 9 N -0.835 5.835 10 O -0.584 6.584 11 C 0.136 3.864 12 N -0.639 5.639 13 C 0.542 3.458 14 O -0.608 6.608 15 C -0.568 4.568 16 H 0.095 0.905 17 C 0.033 3.967 18 N -0.823 5.823 19 Si 0.988 3.012 20 H -0.239 1.239 21 H -0.279 1.279 22 H -0.272 1.272 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.416 0.584 31 H 0.409 0.591 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.757 -1.425 -3.766 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.037 3.963 3 H 0.077 0.923 4 C -0.157 4.157 5 C -0.127 4.127 6 C -0.143 4.143 7 H 0.119 0.881 8 C 0.317 3.683 9 N -0.399 5.399 10 O -0.464 6.464 11 C 0.012 3.988 12 N -0.376 5.376 13 C 0.348 3.652 14 O -0.494 6.494 15 C -0.604 4.604 16 H 0.113 0.887 17 C -0.182 4.182 18 N -0.453 5.453 19 Si 0.808 3.192 20 H -0.161 1.161 21 H -0.204 1.204 22 H -0.197 1.197 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.247 0.753 31 H 0.241 0.759 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.205 -1.021 -4.424 11.169 hybrid contribution -0.083 -0.527 1.075 1.200 sum 10.121 -1.548 -3.349 10.773 Atomic orbital electron populations 1.21819 0.94513 1.01354 0.98715 1.21126 0.94476 0.94918 0.85776 0.92308 1.21933 0.95402 1.00804 0.97536 1.21231 0.94887 1.00171 0.96396 1.21725 0.91590 1.02428 0.98527 0.88084 1.20479 0.90274 0.76631 0.80867 1.43760 1.12375 1.56217 1.27519 1.90692 1.65592 1.49814 1.40340 1.21409 0.81312 0.99462 0.96646 1.48089 1.06651 1.61938 1.20952 1.18599 0.85118 0.77747 0.83757 1.90623 1.17348 1.60526 1.80882 1.21532 0.95624 1.39805 1.03448 0.88701 1.26875 0.94335 0.94492 1.02535 1.70171 1.04641 1.34769 1.35730 0.85103 0.80314 0.77681 0.76062 1.16141 1.20406 1.19682 0.94652 0.94425 0.93168 0.92813 0.88994 0.91641 0.90788 0.75350 0.75870 0.92682 0.88344 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 7.59 71.98 0.55 -4.03 16 2 C 0.14 5.35 3.49 44.97 0.16 5.51 16 3 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.12 -3.61 5.37 30.67 0.16 -3.44 16 5 C -0.09 -2.54 4.46 30.62 0.14 -2.40 16 6 C -0.12 -3.46 2.67 -11.46 -0.03 -3.49 16 7 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 8 C 0.53 14.30 7.43 87.66 0.65 14.96 16 9 N -0.84 -15.67 8.78 -173.53 -1.52 -17.20 16 10 O -0.58 -19.53 16.82 -3.05 -0.05 -19.59 16 11 C 0.14 4.54 5.44 86.36 0.47 5.01 16 12 N -0.64 -27.38 2.97 -800.08 -2.38 -29.75 16 13 C 0.54 29.34 7.52 86.36 0.65 29.99 16 14 O -0.61 -37.66 10.47 -4.28 -0.04 -37.71 16 15 C -0.57 -29.49 8.72 24.83 0.22 -29.27 16 16 H 0.10 4.28 5.92 -2.91 -0.02 4.26 16 17 C 0.03 1.70 5.50 85.30 0.47 2.17 16 18 N -0.82 -48.14 11.87 21.84 0.26 -47.88 16 19 Si 0.99 38.17 29.56 68.60 2.03 40.20 16 20 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 21 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 23 H 0.03 1.74 6.70 -2.39 -0.02 1.73 16 24 H 0.04 1.84 6.79 -2.39 -0.02 1.83 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 29 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.42 6.49 8.37 -92.71 -0.78 5.71 16 31 H 0.41 6.16 8.93 -92.71 -0.83 5.33 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 3.21 5.06 -2.39 -0.01 3.20 16 34 H 0.27 14.50 8.29 -92.71 -0.77 13.73 16 Total: -1.00 -73.04 275.08 1.25 -71.79 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.47 Total: 25.13 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 3.43 Total: 15.01 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -3.64 Total: -94.83 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -0.10 Total: -57.30 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -73.04 1.25 -71.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044413075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.425 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds