Wall clock time and date at job start Mon Mar 30 2020 04:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21285 * 120.00491 * 2 1 4 4 N 1.34777 * 119.99934 * 180.02562 * 2 1 3 5 5 C 1.46963 * 120.59580 * 179.97438 * 4 2 1 6 6 C 1.53365 * 108.63701 * 235.24777 * 5 4 2 7 7 N 1.46963 * 108.63817 * 310.57373 * 6 5 4 8 8 C 1.34770 * 120.59971 * 235.20386 * 7 6 5 9 9 O 1.21287 * 119.99720 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00389 * 180.02562 * 8 7 6 11 11 C 1.50697 * 109.46993 * 180.02562 * 10 8 7 12 12 H 1.07991 * 120.00449 * 359.72131 * 11 10 8 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 C 1.46972 * 118.80716 * 55.47778 * 7 6 5 20 20 C 1.46965 * 120.59309 * 0.02562 * 4 2 1 21 21 H 1.09001 * 109.47092 * 239.99746 * 1 2 3 22 22 H 1.09005 * 109.47173 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47333 * 119.99544 * 1 2 3 24 24 H 1.09002 * 109.60861 * 115.50088 * 5 4 2 25 25 H 1.09005 * 109.60942 * 354.99814 * 5 4 2 26 26 H 1.09002 * 109.60953 * 190.82627 * 6 5 4 27 27 H 1.09002 * 109.75413 * 70.40779 * 6 5 4 28 28 H 1.08998 * 109.47083 * 59.99537 * 10 8 7 29 29 H 1.09001 * 109.46875 * 299.99800 * 10 8 7 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.60647 * 64.26378 * 19 7 6 32 32 H 1.08997 * 109.60602 * 184.77634 * 19 7 6 33 33 H 1.09001 * 109.60679 * 244.49221 * 20 4 2 34 34 H 1.08996 * 109.61140 * 4.83180 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6504 -1.1825 -0.0011 6 6 4.1314 -2.0157 -1.1955 7 7 3.4098 -3.2960 -1.1960 8 6 4.0836 -4.4632 -1.1975 9 8 5.2965 -4.4632 -1.1988 10 6 3.3301 -5.7683 -1.1986 11 6 4.3094 -6.9137 -1.1994 12 1 5.3712 -6.7164 -1.2037 13 6 3.8498 -8.2136 -1.2000 14 7 2.5568 -8.4539 -1.1943 15 14 5.0637 -9.6334 -1.2088 16 1 5.9233 -9.5574 -0.0003 17 1 4.3210 -10.9195 -1.2086 18 1 5.9115 -9.5522 -2.4253 19 6 1.9402 -3.2807 -1.2012 20 6 1.4592 -2.4475 -0.0017 21 1 -0.3633 -0.5139 0.8900 22 1 -0.3634 1.0277 0.0005 23 1 -0.3634 -0.5137 -0.8900 24 1 4.0119 -1.6286 0.9254 25 1 4.0268 -0.1634 -0.0905 26 1 5.2021 -2.1992 -1.1060 27 1 3.9283 -1.4809 -2.1233 28 1 2.7032 -5.8250 -2.0884 29 1 2.7038 -5.8269 -0.3084 30 1 2.2335 -9.3685 -1.1943 31 1 1.5823 -2.8325 -2.1280 32 1 1.5635 -4.2999 -1.1154 33 1 1.6644 -2.9839 0.9248 34 1 0.3883 -2.2638 -0.0884 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049814508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:32 Heat of formation + Delta-G solvation = -68.214496 kcal Electronic energy + Delta-G solvation = -17437.892928 eV Core-core repulsion = 14563.880573 eV Total energy + Delta-G solvation = -2874.012355 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.29505 -38.84360 -36.62023 -33.73568 -33.07524 -31.91870 -29.76187 -29.03940 -27.06483 -24.13402 -23.41880 -22.09847 -19.87870 -18.18347 -17.05850 -16.52886 -16.09133 -15.68626 -15.56649 -15.21769 -14.94319 -14.41633 -13.76233 -13.70625 -13.10641 -12.99194 -12.73292 -12.33017 -12.21603 -12.13708 -11.47610 -11.42235 -11.31749 -11.20715 -10.81463 -10.66046 -9.99869 -9.91990 -9.30477 -9.11196 -8.72128 -8.48118 -8.07368 -6.11332 -4.10785 2.50984 2.82682 3.34500 3.36747 3.41587 3.55502 3.58408 4.42756 4.44495 4.80522 4.85647 5.04035 5.13054 5.16848 5.20458 5.27154 5.39652 5.43136 5.63166 5.70155 5.74452 5.85376 6.01357 6.11431 6.40322 6.87810 7.08873 7.22780 7.28414 7.86125 7.91893 8.04379 8.29056 8.99291 9.09596 9.54597 11.00946 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.049417 B = 0.005293 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.465648 B = 5288.558341 C = 5720.391535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.554 6.554 4 N -0.611 5.611 5 C 0.098 3.902 6 C 0.098 3.902 7 N -0.631 5.631 8 C 0.517 3.483 9 O -0.541 6.541 10 C 0.009 3.991 11 C -0.510 4.510 12 H 0.074 0.926 13 C 0.056 3.944 14 N -0.901 5.901 15 Si 0.902 3.098 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.097 3.903 20 C 0.090 3.910 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 12.543 1.968 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.432 6.432 4 N -0.345 5.345 5 C -0.025 4.025 6 C -0.026 4.026 7 N -0.368 5.368 8 C 0.309 3.691 9 O -0.417 6.417 10 C -0.031 4.031 11 C -0.549 4.549 12 H 0.092 0.908 13 C -0.145 4.145 14 N -0.541 5.541 15 Si 0.730 3.270 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.028 4.028 20 C -0.034 4.034 21 H 0.107 0.893 22 H 0.109 0.891 23 H 0.108 0.892 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.464 12.919 1.967 14.579 hybrid contribution 0.369 -0.881 -0.017 0.955 sum -6.095 12.039 1.949 13.634 Atomic orbital electron populations 1.21939 0.91801 1.05297 1.04291 1.20840 0.90682 0.82967 0.75428 1.90696 1.70838 1.31094 1.50594 1.48149 1.07167 1.06132 1.73098 1.22025 0.79427 1.01958 0.99121 1.21799 0.99100 0.84609 0.97112 1.48369 1.06093 1.05843 1.76505 1.22130 0.88568 0.85513 0.72842 1.90536 1.14932 1.87055 1.49152 1.19242 0.96815 0.87749 0.99246 1.21131 0.93888 0.89477 1.50365 0.90780 1.24990 0.95369 0.99015 0.95080 1.69934 1.12523 1.20594 1.51021 0.86481 0.80906 0.80721 0.78907 1.20106 1.21324 1.20113 1.22121 0.81112 1.02387 0.97165 1.22339 0.96921 0.84025 1.00072 0.89311 0.89143 0.89202 0.91004 0.88321 0.88102 0.92004 0.93459 0.93414 0.92805 0.91565 0.87145 0.90302 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.66 36.00 0.31 -1.02 16 2 C 0.51 6.30 7.81 -10.99 -0.09 6.22 16 3 O -0.55 -9.01 16.49 5.55 0.09 -8.92 16 4 N -0.61 -7.43 2.95 -172.25 -0.51 -7.93 16 5 C 0.10 1.30 6.59 -3.60 -0.02 1.28 16 6 C 0.10 1.46 6.59 -3.60 -0.02 1.44 16 7 N -0.63 -10.69 2.94 -172.24 -0.51 -11.20 16 8 C 0.52 11.46 7.69 -10.99 -0.08 11.37 16 9 O -0.54 -13.83 14.87 5.55 0.08 -13.74 16 10 C 0.01 0.21 3.80 -29.04 -0.11 0.10 16 11 C -0.51 -14.43 8.92 -34.44 -0.31 -14.74 16 12 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 15 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.10 1.25 6.53 -3.39 -0.02 1.23 16 20 C 0.09 0.94 6.52 -3.39 -0.02 0.91 16 21 H 0.09 0.52 7.91 -51.93 -0.41 0.11 16 22 H 0.09 0.68 8.12 -51.93 -0.42 0.25 16 23 H 0.09 0.54 7.72 -51.93 -0.40 0.14 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.10 1.32 6.99 -51.93 -0.36 0.96 16 26 H 0.10 1.65 6.99 -51.93 -0.36 1.28 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 1.16 7.90 -51.93 -0.41 0.75 16 29 H 0.05 1.15 7.73 -51.93 -0.40 0.75 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.51 5.91 -51.93 -0.31 1.20 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.67 5.91 -51.93 -0.31 0.36 16 LS Contribution 282.79 15.07 4.26 4.26 Total: -1.00 -34.04 282.79 -5.89 -39.94 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.57 Total: -2.59 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -0.47 Total: 8.27 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.28 Total: -43.90 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.04 -5.89 -39.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049814508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.279 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds