Wall clock time and date at job start Mon Mar 30 2020 04:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47306 * 2 1 4 4 C 1.50697 * 109.47316 * 120.00823 * 2 1 3 5 5 H 1.07997 * 120.00299 * 119.99836 * 4 2 1 6 6 C 1.37881 * 119.99656 * 299.99612 * 4 2 1 7 7 N 1.31512 * 120.00094 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99746 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47424 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47184 * 120.00291 * 8 6 4 11 11 H 1.48505 * 109.47117 * 240.00059 * 8 6 4 12 12 C 1.50708 * 109.46686 * 240.00516 * 2 1 3 13 13 O 1.21283 * 119.99849 * 264.20720 * 12 2 1 14 14 N 1.34771 * 119.99729 * 84.21073 * 12 2 1 15 15 C 1.46965 * 120.59257 * 175.49020 * 14 12 2 16 16 C 1.53368 * 108.63838 * 235.20331 * 15 14 12 17 17 N 1.46965 * 108.63364 * 310.57529 * 16 15 14 18 18 C 1.34775 * 120.59142 * 235.20041 * 17 16 15 19 19 O 1.21275 * 120.00175 * 359.72252 * 18 17 16 20 20 C 1.46964 * 118.81127 * 55.47976 * 17 16 15 21 21 C 1.46965 * 120.59716 * 355.46682 * 14 12 2 22 22 H 1.09006 * 109.47176 * 306.46299 * 1 2 3 23 23 H 1.09002 * 109.47547 * 66.46424 * 1 2 3 24 24 H 1.08998 * 109.47193 * 186.46373 * 1 2 3 25 25 H 0.97004 * 120.00006 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.61369 * 115.45915 * 15 14 12 27 27 H 1.09006 * 109.61116 * 354.94913 * 15 14 12 28 28 H 1.09003 * 109.61516 * 190.82917 * 16 15 14 29 29 H 1.09004 * 109.61010 * 70.32232 * 16 15 14 30 30 H 1.08007 * 119.99276 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.61115 * 64.26049 * 20 17 16 32 32 H 1.09003 * 109.60909 * 184.77969 * 20 17 16 33 33 H 1.08997 * 109.61005 * 244.53590 * 21 14 12 34 34 H 1.08990 * 109.60804 * 5.05569 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9428 0.8294 2.6034 8 14 2.3214 -1.1207 4.0077 9 1 3.1464 -2.2874 3.6035 10 1 3.1467 -0.1878 4.8164 11 1 1.1661 -1.5871 4.8159 12 6 2.0322 -0.7104 -1.2306 13 8 2.3343 -1.8835 -1.1728 14 7 2.1458 -0.0419 -2.3953 15 6 2.7261 -0.6932 -3.5781 16 6 3.8916 0.1638 -4.0872 17 7 3.4369 1.5570 -4.1975 18 6 3.5505 2.2254 -5.3623 19 8 4.0361 1.6792 -6.3301 20 6 2.8618 2.2102 -3.0132 21 6 1.6911 1.3513 -2.5056 22 1 -0.3634 0.6108 0.8265 23 1 -0.3634 0.4104 -0.9422 24 1 -0.3633 -1.0211 0.1157 25 1 0.7082 1.1606 3.4845 26 1 1.9683 -0.7798 -4.3568 27 1 3.0913 -1.6840 -3.3078 28 1 4.2099 -0.1956 -5.0658 29 1 4.7231 0.1049 -3.3850 30 1 3.2136 3.2492 -5.4324 31 1 3.6217 2.2935 -2.2363 32 1 2.4997 3.2025 -3.2824 33 1 0.8597 1.4103 -3.2080 34 1 1.3729 1.7108 -1.5271 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049814509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:24 Heat of formation + Delta-G solvation = -62.901673 kcal Electronic energy + Delta-G solvation = -17727.153189 eV Core-core repulsion = 14853.371215 eV Total energy + Delta-G solvation = -2873.781974 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11841 -38.79214 -36.61517 -33.93769 -33.59130 -31.63306 -30.23520 -27.63446 -25.24469 -24.29601 -23.29700 -22.10155 -20.27342 -18.57381 -17.08314 -16.56765 -16.12969 -15.76027 -15.20375 -15.12140 -14.82599 -14.40722 -13.94724 -13.29566 -13.17807 -12.86617 -12.58322 -12.25985 -11.55968 -11.52263 -11.34185 -11.26707 -11.03850 -10.75732 -10.69519 -10.33034 -10.06310 -9.98681 -9.12226 -9.02680 -8.65837 -8.38029 -8.05306 -6.10552 -4.13083 2.60956 2.90714 3.28054 3.36105 3.43070 3.58043 3.61179 4.41393 4.58560 4.85668 4.89714 5.17712 5.21873 5.24317 5.40350 5.51216 5.67464 5.73376 5.87559 6.02962 6.07317 6.36592 6.57742 6.74741 6.88823 6.95311 7.26798 7.37042 7.68441 7.88897 7.99343 7.99855 8.29140 8.93221 9.10969 9.52229 10.97414 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.042176 B = 0.005961 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.723651 B = 4696.410762 C = 4851.711858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.032 3.968 3 H 0.048 0.952 4 C -0.501 4.501 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.524 3.476 13 O -0.543 6.543 14 N -0.629 5.629 15 C 0.098 3.902 16 C 0.094 3.906 17 N -0.617 5.617 18 C 0.494 3.506 19 O -0.563 6.563 20 C 0.094 3.906 21 C 0.094 3.906 22 H 0.091 0.909 23 H 0.011 0.989 24 H 0.036 0.964 25 H 0.261 0.739 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 6.193 -10.225 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.539 4.539 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.316 3.684 13 O -0.419 6.419 14 N -0.366 5.366 15 C -0.026 4.026 16 C -0.029 4.029 17 N -0.353 5.353 18 C 0.264 3.736 19 O -0.439 6.439 20 C -0.030 4.030 21 C -0.030 4.030 22 H 0.109 0.891 23 H 0.030 0.970 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.478 5.361 -10.559 11.934 hybrid contribution 0.188 -0.234 0.907 0.956 sum 1.666 5.128 -9.652 11.056 Atomic orbital electron populations 1.21721 0.96109 1.01260 0.99625 1.18900 0.94302 0.96529 0.89177 0.93386 1.21109 1.31252 1.12529 0.89025 0.91197 1.24925 0.95020 0.95025 0.99083 1.69877 1.36976 1.23064 1.23546 0.86407 0.78680 0.79786 0.82453 1.19591 1.21024 1.20950 1.22106 0.75187 0.87234 0.83886 1.90534 1.49672 1.16998 1.84675 1.48335 1.64013 1.13178 1.11036 1.21794 0.95026 0.97751 0.88009 1.22020 0.96967 0.81147 1.02811 1.48634 1.61063 1.13867 1.11690 1.22668 0.78202 0.91533 0.81233 1.90686 1.45182 1.71182 1.36858 1.22292 0.96795 0.96255 0.87644 1.22198 0.95271 0.81848 1.03729 0.89081 0.96959 0.94502 0.92941 0.92071 0.88225 0.88352 0.91029 0.85572 0.90190 0.88772 0.91610 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.60 37.16 0.32 -2.57 16 2 C 0.03 0.75 1.77 -92.92 -0.16 0.59 16 3 H 0.05 1.12 6.54 -51.93 -0.34 0.78 16 4 C -0.50 -13.74 8.33 -34.44 -0.29 -14.03 16 5 H 0.07 2.05 7.01 -52.49 -0.37 1.68 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.13 11.39 55.43 0.63 -23.50 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.52 11.59 6.80 -10.98 -0.07 11.52 16 13 O -0.54 -13.91 15.21 5.56 0.08 -13.82 16 14 N -0.63 -10.71 2.95 -172.21 -0.51 -11.22 16 15 C 0.10 1.47 6.58 -3.60 -0.02 1.44 16 16 C 0.09 1.24 6.59 -3.60 -0.02 1.21 16 17 N -0.62 -7.17 2.94 -177.30 -0.52 -7.69 16 18 C 0.49 5.55 11.81 54.05 0.64 6.19 16 19 O -0.56 -8.81 16.58 5.56 0.09 -8.71 16 20 C 0.09 0.96 6.69 -3.36 -0.02 0.94 16 21 C 0.09 1.23 5.96 -3.36 -0.02 1.21 16 22 H 0.09 2.20 6.27 -51.93 -0.33 1.87 16 23 H 0.01 0.22 7.35 -51.93 -0.38 -0.16 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 1.64 7.02 -51.93 -0.36 1.27 16 28 H 0.10 1.30 6.99 -51.93 -0.36 0.93 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.13 0.86 7.89 -52.48 -0.41 0.45 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.61 7.81 -51.93 -0.41 0.20 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.59 5.10 -51.93 -0.26 1.32 16 LS Contribution 279.37 15.07 4.21 4.21 Total: -1.00 -32.82 279.37 -5.26 -38.08 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.48 Total: -1.58 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.25 Total: 8.02 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.40 Total: -42.41 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.18 Total: -22.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.82 -5.26 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049814509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.821 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds